BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0581900 Os11g0581900|AK069449
(258 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G02690.1 | chr4:1186023-1187534 FORWARD LENGTH=249 211 2e-55
AT1G03070.1 | chr1:730148-731379 FORWARD LENGTH=248 207 5e-54
AT3G63310.1 | chr3:23387938-23388882 REVERSE LENGTH=240 201 3e-52
AT4G14730.1 | chr4:8448607-8450001 FORWARD LENGTH=236 181 3e-46
AT4G15470.1 | chr4:8843661-8845505 FORWARD LENGTH=257 169 1e-42
>AT4G02690.1 | chr4:1186023-1187534 FORWARD LENGTH=249
Length = 248
Score = 211 bits (538), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/234 (45%), Positives = 147/234 (62%), Gaps = 3/234 (1%)
Query: 24 EKEVVAEKAPARRKV--AAEEEDPRLRWAFVRKVYCILALQFXXXXXXXXXXXXXRPIPR 81
K+ V +RR + A E+P LRW F+RKVY I+A Q RPI
Sbjct: 9 RKDDVETGVSSRRPLLYPAMHENPELRWGFIRKVYSIIAFQLLATVAVAATVVTVRPIAL 68
Query: 82 FFAAGSLASWLVYLAILLCPFIVLWPMLKYREKHPVNLLLLGLFTLCESLTIAVCSSTFL 141
FFA L L Y+ I++ P IVL P+ Y +KHPVN LLLG+FTL + + + +
Sbjct: 69 FFATTGLGLAL-YIVIIITPLIVLCPLYYYHQKHPVNYLLLGIFTLALAFVVGLTCAFTN 127
Query: 142 GKVVLQAAILTAVAVIGLTIFTFWAAHRGHDFTFMYPFXXXXXXXXXXXXIIQICFPLGR 201
GKV+L++ ILT+V V+ LT++TFWAA +G+DF F+ PF +IQI FPLGR
Sbjct: 128 GKVILESVILTSVVVLSLTLYTFWAARKGYDFNFLGPFLFGALTVLIFFALIQILFPLGR 187
Query: 202 AGMTIYGCLATVLFSAFIVFDTNQLIKRHTYNEYVIAAISLYLDVINLFMAQLS 255
+ IYGCL +++F +IV+DT+ LIKRHTY+EY+ AA+SLYLD+INLF+ L+
Sbjct: 188 VSVMIYGCLVSIIFCGYIVYDTDNLIKRHTYDEYIWAAVSLYLDIINLFLYLLT 241
>AT1G03070.1 | chr1:730148-731379 FORWARD LENGTH=248
Length = 247
Score = 207 bits (527), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 103/215 (47%), Positives = 141/215 (65%), Gaps = 5/215 (2%)
Query: 43 EDPRLRWAFVRKVYCILALQFXXXXXXXXXXXXXRPIPRFFAAGS--LASWLVYLAILLC 100
E P LRW F+RKVY I+A Q RPI FFA S LA W+V +++
Sbjct: 30 ESPELRWGFIRKVYSIIAFQLLATIAVASTVVFVRPIAVFFATTSAGLALWIV---LIIT 86
Query: 101 PFIVLWPMLKYREKHPVNLLLLGLFTLCESLTIAVCSSTFLGKVVLQAAILTAVAVIGLT 160
P IV+ P+ Y +KHPVN LLLG+FT+ + + + + GKV+L+AAILT V V+ LT
Sbjct: 87 PLIVMCPLYYYHQKHPVNYLLLGIFTVALAFAVGLTCAFTSGKVILEAAILTTVVVLSLT 146
Query: 161 IFTFWAAHRGHDFTFMYPFXXXXXXXXXXXXIIQICFPLGRAGMTIYGCLATVLFSAFIV 220
++TFWAA +G+DF F+ PF +IQI FPLGR + IYGCLA ++F +IV
Sbjct: 147 VYTFWAAKKGYDFNFLGPFLFGALIVLMVFALIQIFFPLGRISVMIYGCLAAIIFCGYIV 206
Query: 221 FDTNQLIKRHTYNEYVIAAISLYLDVINLFMAQLS 255
+DT+ LIKR++Y+EY+ AA+SLYLD+INLF+A L+
Sbjct: 207 YDTDNLIKRYSYDEYIWAAVSLYLDIINLFLALLT 241
>AT3G63310.1 | chr3:23387938-23388882 REVERSE LENGTH=240
Length = 239
Score = 201 bits (511), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 96/207 (46%), Positives = 134/207 (64%), Gaps = 1/207 (0%)
Query: 42 EEDPRLRWAFVRKVYCILALQFXXXXXXXXXXXXXRPIPRFFAAGSLASWLVYLAILLCP 101
E P LRW+F+RKVY I+++Q I FF + A + +Y+ ++L P
Sbjct: 20 SESPELRWSFIRKVYSIISIQLLVTIAVAATVVKVHSISVFFTTTT-AGFALYILLILTP 78
Query: 102 FIVLWPMLKYREKHPVNLLLLGLFTLCESLTIAVCSSTFLGKVVLQAAILTAVAVIGLTI 161
IV+ P+ Y +KHPVN LLLG+FT+ + + + + GKV+L++ ILTAV VI LT+
Sbjct: 79 LIVMCPLYYYHQKHPVNYLLLGIFTVALAFAVGLTCAFTSGKVILESVILTAVVVISLTL 138
Query: 162 FTFWAAHRGHDFTFMYPFXXXXXXXXXXXXIIQICFPLGRAGMTIYGCLATVLFSAFIVF 221
+TFWAA RGHDF F+ PF IQI FPLG+ + IYGCLA+++F +IV+
Sbjct: 139 YTFWAAKRGHDFNFLGPFLFGAVIVLMVFSFIQILFPLGKISVMIYGCLASIIFCGYIVY 198
Query: 222 DTNQLIKRHTYNEYVIAAISLYLDVIN 248
DT+ LIKRH+Y+EY+ AA+SLYLDVIN
Sbjct: 199 DTDNLIKRHSYDEYIWAAVSLYLDVIN 225
>AT4G14730.1 | chr4:8448607-8450001 FORWARD LENGTH=236
Length = 235
Score = 181 bits (460), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 98/226 (43%), Positives = 138/226 (61%), Gaps = 1/226 (0%)
Query: 30 EKAPARRKVAAEEEDPRLRWAFVRKVYCILALQFXXXXXXXXXXXXXRPIPRFFAAGSLA 89
E +E LRWAF+RK+Y IL+LQ RPIP F +
Sbjct: 7 ETGGGNELYPGMKESSELRWAFIRKLYSILSLQLLVTVGVSAVVYFVRPIPEFITE-THR 65
Query: 90 SWLVYLAILLCPFIVLWPMLKYREKHPVNLLLLGLFTLCESLTIAVCSSTFLGKVVLQAA 149
V+ ILL P ++LWP+L + +KHP+N ++L +FTL S ++ +C S G++VL+AA
Sbjct: 66 GLAVFFVILLLPLLLLWPLLAFEKKHPINCIVLSIFTLSISFSVGICCSLSQGRIVLEAA 125
Query: 150 ILTAVAVIGLTIFTFWAAHRGHDFTFMYPFXXXXXXXXXXXXIIQICFPLGRAGMTIYGC 209
ILTAV V GLTI+TFWA RGHDF+F+ PF ++QI PLG+ I+
Sbjct: 126 ILTAVMVFGLTIYTFWAVKRGHDFSFLGPFLFGALLIILVFTLLQIFHPLGKLSSMIFSG 185
Query: 210 LATVLFSAFIVFDTNQLIKRHTYNEYVIAAISLYLDVINLFMAQLS 255
+A+++F +I+FDTNQLIK+ Y+EY+ AAI LYLDV+NLF++ L
Sbjct: 186 IASIVFCGYIIFDTNQLIKKLNYDEYITAAIRLYLDVMNLFLSLLG 231
>AT4G15470.1 | chr4:8843661-8845505 FORWARD LENGTH=257
Length = 256
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 126/211 (59%), Gaps = 4/211 (1%)
Query: 44 DPRLRWAFVRKVYCILALQFXXXXXXXXXXXXXRPIPRFFAAGSLASWLVYLAILLCPFI 103
+ +LRW F+RKVY IL+ Q P+ L++L I+ PFI
Sbjct: 42 ENQLRWGFIRKVYGILSAQLLLTTLISAVVVLNPPVNDLLTGS--PGILLFLCIV--PFI 97
Query: 104 VLWPMLKYREKHPVNLLLLGLFTLCESLTIAVCSSTFLGKVVLQAAILTAVAVIGLTIFT 163
++WP+ Y +KHPVNL+LL LFT+ S T+ V + G++VLQA ILT V LT +T
Sbjct: 98 LIWPLHIYHQKHPVNLILLALFTVSLSFTVGVSCAMTEGRIVLQALILTLSVVGSLTAYT 157
Query: 164 FWAAHRGHDFTFMYPFXXXXXXXXXXXXIIQICFPLGRAGMTIYGCLATVLFSAFIVFDT 223
FWAA +G DF+F+ P IQ+ FPLG + +YG + ++F +IV+DT
Sbjct: 158 FWAAKKGKDFSFLGPILFTSLIILVVTSFIQMFFPLGPTSVAVYGGFSALVFCGYIVYDT 217
Query: 224 NQLIKRHTYNEYVIAAISLYLDVINLFMAQL 254
+ LIKR TY+EY++A+++LYLD++NLF+ L
Sbjct: 218 DNLIKRFTYDEYILASVALYLDILNLFLTIL 248
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.333 0.143 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,275,458
Number of extensions: 141696
Number of successful extensions: 599
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 594
Number of HSP's successfully gapped: 5
Length of query: 258
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 162
Effective length of database: 8,474,633
Effective search space: 1372890546
Effective search space used: 1372890546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 110 (47.0 bits)