BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0581700 Os11g0581700|J090014D22
         (111 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14723.1  | chr4:8440167-8440693 FORWARD LENGTH=110             59   6e-10
AT3G22820.1  | chr3:8073451-8074061 REVERSE LENGTH=108             55   6e-09
AT2G30370.1  | chr2:12940577-12942167 REVERSE LENGTH=231           53   3e-08

>AT4G14723.1 | chr4:8440167-8440693 FORWARD LENGTH=110
          Length = 109

 Score = 58.5 bits (140), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 30/52 (57%)

Query: 60  GPGSSXXXXXXXXXXXXXXXXVHVAIQPGVGAQWEYYPEVWRCKCGDKLFMP 111
           GPGSS                VHV IQPG+    EYYPE WRCKCG+KLFMP
Sbjct: 58  GPGSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPLEYYPEAWRCKCGNKLFMP 109



>AT3G22820.1 | chr3:8073451-8074061 REVERSE LENGTH=108
          Length = 107

 Score = 55.5 bits (132), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 30/54 (55%)

Query: 58  LIGPGSSXXXXXXXXXXXXXXXXVHVAIQPGVGAQWEYYPEVWRCKCGDKLFMP 111
           L GPGS                 VHV IQPG+    EYYPE WRCKCG+KLFMP
Sbjct: 54  LGGPGSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPLEYYPEAWRCKCGNKLFMP 107



>AT2G30370.1 | chr2:12940577-12942167 REVERSE LENGTH=231
          Length = 230

 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 23/31 (74%)

Query: 81  VHVAIQPGVGAQWEYYPEVWRCKCGDKLFMP 111
           VHV + PG     EYYPE WRCKCG+KL+MP
Sbjct: 200 VHVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 230



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.138    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,103,559
Number of extensions: 20232
Number of successful extensions: 20
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 3
Length of query: 111
Length of database: 11,106,569
Length adjustment: 80
Effective length of query: 31
Effective length of database: 8,913,289
Effective search space: 276311959
Effective search space used: 276311959
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)