BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0579600 Os11g0579600|AK106009
(404 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G03560.1 | chr2:1079639-1081376 FORWARD LENGTH=454 66 3e-11
AT2G17030.1 | chr2:7399108-7400650 FORWARD LENGTH=408 65 9e-11
AT3G03730.1 | chr3:935139-936320 REVERSE LENGTH=394 61 1e-09
AT5G55150.1 | chr5:22382275-22383392 REVERSE LENGTH=361 50 3e-06
>AT2G03560.1 | chr2:1079639-1081376 FORWARD LENGTH=454
Length = 453
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 103/234 (44%), Gaps = 20/234 (8%)
Query: 1 IFSTLEILDLIRAGSVCNSWRSAYTSICSLGHCKPQQTPCLLYTFESDGTKATGLYSLAE 60
I +L LD RA VC+ W S + + +P + ++Y + + + L+ E
Sbjct: 33 IIESLSSLDFYRAKIVCSDWYSVWKTCVK----RPLRPWRIIYRAKYYISTSLMLFDPDE 88
Query: 61 KKAY--MLTLLDPALPSRFIIGSSHGWIITADERSELHLVNPITGKQIALAPV-TTIEQV 117
K Y ++ + D + + + SS W++ AD R + ++VN +TGK+I L P+ + I
Sbjct: 89 DKIYKNLVGVSDES----YRLASSGNWLLMADSRLDFYIVNLLTGKRINLPPMESKIRGA 144
Query: 118 KPIFDDSGAVHKYKYSWYTGQMTVSDSPSILAPDELRNFLFSKAIVSSDPSGGNFIVVLI 177
+ F S +K +Y + ++ S + + A++ D G++ V I
Sbjct: 145 QARFVQSKYFYKSRYICFDNCNSIRISEKEVFESK------RAAVLWIDERTGDYFVAWI 198
Query: 178 HNPHLQLSIARPGDDKWTWLPP--HKDYEDCIFRDGLLYALTSAGEIHEYDLSG 229
N H L + GDD W W Y D +++ LY + I +D SG
Sbjct: 199 FNKHY-LFTHKKGDDSWCWNRKWTKPGYLDLAYKNNKLYIYNTDNYIKIFDFSG 251
>AT2G17030.1 | chr2:7399108-7400650 FORWARD LENGTH=408
Length = 407
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 94/404 (23%), Positives = 161/404 (39%), Gaps = 47/404 (11%)
Query: 8 LDLIRAGSVCNSWRSAYTSICSLGHCKPQQTPCLLYTFESDGTKATGLYSLAEKKAYMLT 67
DLI+ SVC+SWRSA L P L S + + L+++ ++
Sbjct: 23 FDLIQFRSVCSSWRSAAEPKSPL---PTHHLPILPDNGGSLFPDSAVGFRLSQRSILLIK 79
Query: 68 LLDPALPSRFIIGSSHGWIITADER----SELHLVNPI--TGKQIALAPVTTIEQVKPIF 121
+P + S S GW+I +E ++ L++P+ T I ++ K
Sbjct: 80 PHEPCIES-----DSFGWLIKVEEDLNVPRKVTLLDPLCDTRNSIPENFPRVLDMSKFKV 134
Query: 122 DDSGAVHKYKYSWYTGQMTVSDSPSILAPDELRNFLFSKAIVSSDPSGGN--FIVVLIHN 179
+ G K Y G D + + KA+V G+ F+++ IH
Sbjct: 135 RELGREFKLHYFNTVG-------------DIVESLYLEKAVVKYLDCDGDYKFVLLTIHV 181
Query: 180 PHLQLSIARPGDDKWTWLPPHKD-YEDCIFRDGLLYALTSAGEIHEYDLSGPAIARKIVL 238
+L++ R D WT + Y+D + DG +A+ + G D S + K+ L
Sbjct: 182 SG-KLAVFRSWDRAWTVINDMPSPYDDVMLFDGRFFAVDNNGRTVVVDYS----SLKLTL 236
Query: 239 NKVKGFACENMYIVRTPCGDLLQVWRSYXXXXXXXXXXXXXXXXXXXXXXYVWNTTM-IK 297
F + +++ + CG++L V Y Y+ T+ K
Sbjct: 237 VASPVFGGDKKFLIES-CGEMLLV-DMYLSLEAVEGDPGFVEEIFEHPAFYMNERTVKFK 294
Query: 298 VHKVDLVARMLVEACDLGENVLILGHNQSLCLRA-DEYPLLKANHVYFSDDRELYIKGCK 356
V++ V+ DL + +L LG + + A D PL + V+F+ + G
Sbjct: 295 VYRFVEREESWVDVYDLEDKMLFLGDDSTFSASASDILPLCDGSSVFFNGN---VFNGED 351
Query: 357 NGC---RDIGVFNLENNCAEEIVSLQLWSN--WPPPVWMTPNAR 395
G RD+GVF+ + E + L ++ WPPP W+T +AR
Sbjct: 352 LGAMQDRDLGVFDFRSGKIELVQKLPEYAKLFWPPPPWITSHAR 395
>AT3G03730.1 | chr3:935139-936320 REVERSE LENGTH=394
Length = 393
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 99/232 (42%), Gaps = 19/232 (8%)
Query: 5 LEILDLIRAGSVCNSWRSAYTSICSLGHCKPQQTPCLLYTFESDGTKATGLYSL--AEKK 62
L +D RA V + W SA S +G P +L+ E T S+ +
Sbjct: 29 LSFVDFHRARCVSSVWYSASKSC--IGGTNPTAPWIILFPNEHVKTNNDSCKSIDPRDHS 86
Query: 63 AYMLTLLDPALPSRFIIGSSHGWIITADERSELHLVNPITGKQIALAPVTTIEQVKPIFD 122
+Y + L + + SS W + D +++ HL+N T ++I L + +I+ ++ F
Sbjct: 87 SYTIRDLGFDMVRSRCLASSGSWFLMLDHKTDFHLLNLFTRERIPLPSLESIDGLQMKFV 146
Query: 123 DSGAVHKYKYSWYTGQMTVSDSPSILAPDELRNFLFSKAIVSSDPSGGNFIVVLIHNPHL 182
+G +Y +S + +LR S A++ D G++ VV H H
Sbjct: 147 RTGDCGFEMSMYYKAHGLISYGKN----SDLR---ISDAVLWVDEKNGDYFVVWFH--HS 197
Query: 183 QLSIARPGDDKWTW--LPPHKDYEDCI---FRDGLLYALTSAGEIHEYDLSG 229
+ + G D +W P K ++ CI F++G LY L A I +D SG
Sbjct: 198 TFAYHKKGGDNNSWKVFQPSK-HQGCINMVFKEGKLYVLNPARNISVFDFSG 248
>AT5G55150.1 | chr5:22382275-22383392 REVERSE LENGTH=361
Length = 360
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 32/154 (20%)
Query: 77 FIIGSSHGWIITADERSELHLVNPITGKQIALAPVTTIEQVKPIFDDSGAVHKYKYSWYT 136
++ GS+ G+++T P+T +L P+ + E V+ +
Sbjct: 90 WVCGSTLGFLLT----------KPVTKSVTSLPPLISFEDVQRLLQ-------------- 125
Query: 137 GQMTVSDSPSILAPDELRNFLFSKAIVSSDPSGGNFIVVLIHNPHLQLSIARPGDDKWTW 196
Q + DS + L+NF+ KA+ S+ ++V++I+N +L+ R GD +WT
Sbjct: 126 SQAIIPDS------EALKNFI-KKAVSSTSLLDDEWVVLVIYNTDRKLAFCRRGDKQWTD 178
Query: 197 LPP-HKDYEDCIFRDGLLYALTSAGEIHEYDLSG 229
L +D +F +G+ +A+ GEI+ +LS
Sbjct: 179 LESVASSVDDIVFCNGVFFAIDRLGEIYHCELSA 212
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.137 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,167,596
Number of extensions: 371794
Number of successful extensions: 903
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 910
Number of HSP's successfully gapped: 5
Length of query: 404
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 303
Effective length of database: 8,337,553
Effective search space: 2526278559
Effective search space used: 2526278559
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)