BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0572200 Os11g0572200|AK109785
(433 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G07000.1 | chr1:2150398-2152305 REVERSE LENGTH=600 59 6e-09
AT5G58430.1 | chr5:23621460-23623334 REVERSE LENGTH=625 58 1e-08
AT5G50380.1 | chr5:20516382-20518433 REVERSE LENGTH=684 57 2e-08
AT3G14090.1 | chr3:4669508-4671379 REVERSE LENGTH=624 52 6e-07
AT1G54090.1 | chr1:20189737-20191605 FORWARD LENGTH=623 50 2e-06
AT5G03540.3 | chr5:889606-893916 FORWARD LENGTH=665 48 9e-06
>AT1G07000.1 | chr1:2150398-2152305 REVERSE LENGTH=600
Length = 599
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 294 EFQFALFAKASLVKMMCFPDAIAALSRSPEKILRVIDMYAVVSGVSPSLLALLPGATKWL 353
+ F + + +++ F DAIA SR PE++ +V+D+Y + + P + L
Sbjct: 282 DLSFMEVCRGTTTQLLNFADAIALGSRLPERLFKVVDLYEAMQDLIPKMETLFSDRYCSP 341
Query: 354 VSERITAVLKTLSGMMRGILHDLESLIREEDSWRTTAQGNDIHPVNQ 400
+ A+ K L +RGI +LE+LIR D +T G IHP+ +
Sbjct: 342 LRHEALAIHKRLGEAIRGIFMELENLIR-RDPPKTAFPGGGIHPITR 387
>AT5G58430.1 | chr5:23621460-23623334 REVERSE LENGTH=625
Length = 624
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 290 AAGPEFQFALFAKASLVKMMCFPDAIAALSRSPEKILRVIDMYAVVSGVSPSLLALLPGA 349
++ + F + S ++++ F DAIA SRSPE++ +V+D++ + + P ++
Sbjct: 294 SSAADLSFMEVCRGSTIQLLNFADAIAIGSRSPERLFKVLDVFETMRDLMPEFESVFSDQ 353
Query: 350 TKWLVSERITAVLKTLSGMMRGILHDLESLIREEDSWRTTAQGNDIHPVNQ 400
++ + K L +RGI +LE+LIR D + G +HP+ +
Sbjct: 354 FCSVLRNEAVTIWKRLGEAIRGIFMELENLIR-RDPAKAAVPGGGLHPITR 403
>AT5G50380.1 | chr5:20516382-20518433 REVERSE LENGTH=684
Length = 683
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 291 AGPEFQFALFAKASLVKMMCFPDAIAALSRSPEKILRVIDMYAVVSGVSPSLLALLPGAT 350
+ E F K+ +++++ F +A+A RS EK+ R++DMY ++ V +L ++ T
Sbjct: 334 SSKEVCFNETTKSCVMQLLNFGEAVAIGRRSSEKLFRILDMYDALANVLQTLEVMV---T 390
Query: 351 KWLVSERITAVLKTLSGMMRGILHDLESLIREEDSWRTTAQGNDIHPV 398
V VL+ L RG + E+ +R E S R T G ++HP+
Sbjct: 391 DCFVCNETKGVLEALGDAARGTFVEFENNVRNETSKRPTTNG-EVHPM 437
>AT3G14090.1 | chr3:4669508-4671379 REVERSE LENGTH=624
Length = 623
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 290 AAGPEFQFALFAKASLVKMMCFPDAIAALSRSPEKILRVIDMYAVVSGVSPSLLALLPGA 349
A E F KAS +++ FP+AI+ RSPEK+ +++D++ ++ + P + A+
Sbjct: 272 TAMDETCFMETVKASALRLFTFPEAISISRRSPEKLFKILDLHDALTDMLPDIEAIFDSD 331
Query: 350 TKWLVSERITAVLKTLSGMMRGILHDLESLIREEDSWRTTAQGNDIHPVNQ 400
+ + + + L+ RGIL + E+ + E S G IHP+ +
Sbjct: 332 SSDAIRAQAVEIQSRLAEAARGILSEFENAVLREPSI-VPVPGGTIHPLTR 381
>AT1G54090.1 | chr1:20189737-20191605 FORWARD LENGTH=623
Length = 622
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 297 FALFAKASLVKMMCFPDAIAALSRSPEKILRVIDMYAVVSGVSPSLLALLPGATKWLVSE 356
F K S +++ FP+AI+ RSPEK+ +++D++ ++ + P + + ++ +
Sbjct: 273 FMEIVKTSALQLFNFPEAISISRRSPEKLFKILDLHDAITDLLPDMEEIFDSSSSESILV 332
Query: 357 RITAVLKTLSGMMRGILHDLESLIREEDSWRTTAQGNDIHPVNQ 400
+ T + L+ RGIL + E+ + E S G IHP+ +
Sbjct: 333 QATEIQSRLAEAARGILTEFENAVFREPSV-VPVPGGTIHPLTR 375
>AT5G03540.3 | chr5:889606-893916 FORWARD LENGTH=665
Length = 664
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 297 FALFAKASLVKMMCFPDAIAALSRSPEKILRVIDMYAVVSGVSPSLLALLPGATKWLVSE 356
FA +S+ ++ F DAIA RSPEK+ ++DMY ++ + + + G + +
Sbjct: 330 FAEVTVSSVSMLLSFGDAIARSKRSPEKLFVLLDMYEIMRELHTEIETIFKGKACLEIRD 389
Query: 357 RITAVLKTLSGMMRGILHDLESLIREEDSWRTTAQGNDIHPV 398
T + K L+ + D E + E+D+ +T +HP+
Sbjct: 390 SATGLTKRLAQTAQETFGDFEEAV-EKDATKTAVLDGTVHPL 430
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.131 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,240,895
Number of extensions: 249696
Number of successful extensions: 689
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 691
Number of HSP's successfully gapped: 6
Length of query: 433
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 332
Effective length of database: 8,337,553
Effective search space: 2768067596
Effective search space used: 2768067596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)