BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0568700 Os11g0568700|AK099671
         (549 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G06440.4  | chr5:1964641-1966807 REVERSE LENGTH=487            314   9e-86
AT3G11720.3  | chr3:3705991-3708721 REVERSE LENGTH=597            283   2e-76

>AT5G06440.4 | chr5:1964641-1966807 REVERSE LENGTH=487
          Length = 486

 Score =  314 bits (804), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 172/434 (39%), Positives = 248/434 (57%), Gaps = 57/434 (13%)

Query: 5   MEKRREIRELRDRMDRTXXXXXXXXXXXXRSLVKRQILASSLSAGNDEGNIDLIAEARSK 64
           M+K+REI   RD++D+T            +SL++ Q+         DE     I + R+ 
Sbjct: 1   MQKKREICGYRDKLDKTLSSPELTNHETLKSLLRNQLEEC------DEN----ILDKRTD 50

Query: 65  EISNFLEMLNTSGNERSSKIHEASHKEWKVKQDTDQLRVMYREGPEGTPFHTLLAEGFAD 124
           ++S  L  L +            +  +WK+K D +  RVMYREG +G+PFHTLL EG+ D
Sbjct: 51  DVSKLLSKLRSVSMTDHQVSKLTNDGDWKLKHDLEDCRVMYREGLDGSPFHTLLVEGYMD 110

Query: 125 GPIDVCTCVSWESSLYKKWFPQYNLPTFKVAQSGCLKKVRVGEEISLVRV-------KVP 177
           GPI  C CVSWES+LYKKW+PQY  P F++ +S CL+KV VGE+I L R        +VP
Sbjct: 111 GPIHECLCVSWESTLYKKWWPQYAFPPFRILKSTCLQKVGVGEQICLARFVHIENKDEVP 170

Query: 178 WPVSEREALLHYFELEYLKEDLVIVIMKTISDTDNINIETHGFSRDGIPEAGDTVRIDVV 237
           WP++ERE +LHYF  EY K+ LV++++ TISD ++I + +       IPE+ D VR+D+V
Sbjct: 171 WPLTEREMILHYFSFEYFKDGLVVILLNTISDLNSIGVSSTDII---IPESPDAVRMDLV 227

Query: 238 GGFVLQRITKEKSFFRAIANMDIKLDFVPPWLINFISRQLIGSGHKLYQKAVSTVANCDE 297
           GGFVLQ++T ++S+FR I +MDIKLD +PP L+NFISRQLIG+G +LY+K+V++VA  DE
Sbjct: 228 GGFVLQKVTPQRSYFRTIGDMDIKLDLMPPSLMNFISRQLIGNGFRLYKKSVASVAKFDE 287

Query: 298 DYKKALREPLYVRIREHRGSTDIANVTPVEERATEALPDNPTLQNVLAVTNITSNSEIVE 357
           DY +AL +PLY +IR    STD            EA+ + P L+     TN  +   + +
Sbjct: 288 DYSRALTDPLYTKIRRALYSTD------------EAVEEEPKLE-----TNEVNGVTLPK 330

Query: 358 EESEQKALFKLDH--------------------HAIGPSNPPAEQEQHVENKPYISPEVE 397
            E E      ++                           N  A+    +  +  +SPEVE
Sbjct: 331 HEHENNGDASVNKPVHCRRTVPEIEEEEESEESVYSEDGNEIAKTHVDMRRRFCVSPEVE 390

Query: 398 QALNILDKAIAIIR 411
           QAL  LD+ I ++R
Sbjct: 391 QALGTLDRVIFMVR 404



>AT3G11720.3 | chr3:3705991-3708721 REVERSE LENGTH=597
          Length = 596

 Score =  283 bits (723), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 163/433 (37%), Positives = 256/433 (59%), Gaps = 47/433 (10%)

Query: 4   AMEKRREIRELRDRMDRTXXXXXXXXXXXXRSLVKRQILASSLSAGNDEGNIDLIAEARS 63
           +MEK+R++ E R+R++ T            ++LV++Q+        N+E ++D++ + R 
Sbjct: 54  SMEKKRDVSEYRERLNETLSSPELINEQTLKTLVRKQL--------NEECSVDIL-DQRV 104

Query: 64  KEISNFLEML---NTSGNERSSKIHEASHKEWKVKQDTDQLRVMYREGPEGTPFHTLLAE 120
             +S+ +E L   +T   + S    EAS+ +WKVK D    RVMYREG +G+PFHTLL E
Sbjct: 105 AALSSTIEKLRSVSTKDQDLSKSSTEASYGDWKVKHDDKDCRVMYREGLKGSPFHTLLVE 164

Query: 121 GFADGPIDVCTCVSWESSLYKKWFPQYNLPTFKVAQSGCLKKVRVGEEISLVRVKVPWPV 180
           G  DG I+ C CV WESS Y+KW+P+   P+F+V ++ CL+K R+ E+I L+RVK PWP+
Sbjct: 165 GCTDGTIEDCLCVCWESSFYEKWWPKLTFPSFRVLEAKCLQKFRIDEQICLLRVKAPWPL 224

Query: 181 SEREALLHYFELEYLKEDLVIVIMKTISDTDNINIETHGFSRDGIPEAGDTVRIDVVGGF 240
           ++REA+L +F  EY K+DLVI+++      ++I +E+      G     + VRID VGG 
Sbjct: 225 TDREAVLQFFVFEYFKDDLVIILL------NSIEVES------GSVAEVNAVRIDFVGGV 272

Query: 241 VLQRITKEKSFFRAIANMDIKLDFVPPWLINFISRQLIGSGHKLYQKAVSTVANCDEDYK 300
            +Q++T EKS+ R IA +DIKLD VPP LINF+SRQL+G+G KL++K + +VA  D DYK
Sbjct: 273 AIQKVTPEKSYIRFIAEVDIKLDLVPPSLINFMSRQLLGNGFKLFKKTIGSVAESD-DYK 331

Query: 301 KALREPLYVRIREHRGSTD----IANVTPV-EERATEALPDNPTLQ--NVLAVTNITSNS 353
             L +PLY  IRE   S+D    I  V  +  ++  +     P L+  + +   N T + 
Sbjct: 332 TVLADPLYTHIREALYSSDKTDEICQVNELHSQQGRDCEEKEPKLEADDDMEKENETRDC 391

Query: 354 E--------IVEEESEQKALFKLDHH-------AIGPSNPPAEQEQHVENKPYISPEVEQ 398
           E         V E  E++ +  L          +   S+   +++++ + +  ISPEV+Q
Sbjct: 392 ENESVPCKRDVPEIEEEECVDDLKEENKSSPSSSSSSSSSSEDEDKNGKTRFCISPEVKQ 451

Query: 399 ALNILDKAIAIIR 411
           AL  L++ I+++R
Sbjct: 452 ALGTLERVISMVR 464



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,507,127
Number of extensions: 479780
Number of successful extensions: 1089
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1081
Number of HSP's successfully gapped: 2
Length of query: 549
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 446
Effective length of database: 8,282,721
Effective search space: 3694093566
Effective search space used: 3694093566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 114 (48.5 bits)