BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0568500 Os11g0568500|AK059656
         (147 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G22480.2  | chr3:7969080-7969526 FORWARD LENGTH=149            194   2e-50

>AT3G22480.2 | chr3:7969080-7969526 FORWARD LENGTH=149
          Length = 148

 Score =  194 bits (493), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 96/146 (65%), Positives = 121/146 (82%), Gaps = 3/146 (2%)

Query: 1   MASKAGGDG-KEAINEQIIANTYGNMRSEMTQLYTKITELEMEVSEHSLVIGAIEPLDHS 59
           MASK+G  G +E  NEQ + N Y   RSE++Q+Y+ IT+LEM+VSEHSLVI AI+PLD S
Sbjct: 1   MASKSGSGGLREPPNEQAVLNMYEGKRSELSQIYSNITDLEMQVSEHSLVINAIQPLDQS 60

Query: 60  RRCYRMVGGVLVERTIREVLPAVHRNKEGLEEVIARMHEALEKKKKEITEFELKYKIRIR 119
           R+C+RM+GGVLVERTI+EVLPAV RNK+GLEEV+ +++E LEKKKK++TEFE KYKIRI 
Sbjct: 61  RKCFRMIGGVLVERTIKEVLPAVQRNKDGLEEVVRKLYETLEKKKKDLTEFEAKYKIRIT 120

Query: 120 KADSNADEEEGSKKEGSAQGVLVGPA 145
           K + N  +E G+KKEG+AQGVLVG A
Sbjct: 121 KQEDN--KEGGNKKEGNAQGVLVGAA 144



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.130    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,039,966
Number of extensions: 117557
Number of successful extensions: 579
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 579
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 58
Effective length of database: 8,666,545
Effective search space: 502659610
Effective search space used: 502659610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 107 (45.8 bits)