BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0551900 Os11g0551900|AK103055
(409 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G37740.1 | chr4:17725533-17727609 REVERSE LENGTH=536 139 3e-33
AT2G22840.1 | chr2:9728841-9731141 FORWARD LENGTH=531 134 6e-32
AT3G13960.1 | chr3:4608526-4610160 FORWARD LENGTH=398 102 5e-22
AT5G53660.1 | chr5:21794636-21795929 FORWARD LENGTH=366 96 3e-20
AT3G52910.1 | chr3:19616177-19618268 REVERSE LENGTH=381 91 1e-18
AT2G06200.1 | chr2:2426340-2427255 FORWARD LENGTH=245 86 3e-17
AT2G36400.1 | chr2:15270300-15272617 REVERSE LENGTH=399 84 1e-16
AT4G24150.1 | chr4:12535972-12539387 FORWARD LENGTH=494 82 7e-16
AT2G45480.1 | chr2:18745583-18747403 FORWARD LENGTH=430 66 4e-11
>AT4G37740.1 | chr4:17725533-17727609 REVERSE LENGTH=536
Length = 535
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/151 (49%), Positives = 86/151 (56%), Gaps = 20/151 (13%)
Query: 98 QGVLARVRGPFTPTQWMELEHQALIYKHIAANXXXXXXXXXXXXXXXHPWG--------W 149
QG V+GPFT TQW ELE QALIYK+I AN +P+G W
Sbjct: 155 QGNFTGVKGPFTLTQWAELEQQALIYKYITANVPVPSSLLISIKKSFYPYGSLPPSSFGW 214
Query: 150 GSFPPGCA----DVEPRRCRRTDGKKWRCSRDAVGDQKYCERHINRGRHRSRKHVE---- 201
G+F G A D EP RCRRTDGKKWRCSRDAV DQKYCERHINRGRHRSRK VE
Sbjct: 215 GTFHLGFAGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEVQSG 274
Query: 202 ----GRKATLTIAEPSTVIAAGVSSRGHTVA 228
A+ + P + AG ++R + A
Sbjct: 275 QNQTAAAASKAVTTPQQPVVAGNTNRSNARA 305
>AT2G22840.1 | chr2:9728841-9731141 FORWARD LENGTH=531
Length = 530
Score = 134 bits (338), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 68/118 (57%), Positives = 75/118 (63%), Gaps = 12/118 (10%)
Query: 100 VLARVRGPFTPTQWMELEHQALIYKHIAANXXXXXXXXXXXXXXXHPWG--------WGS 151
+L V+GPF+ TQW ELE QALIYK+I AN P+G WGS
Sbjct: 126 LLTGVKGPFSLTQWAELEQQALIYKYITANVPVPSSLLLSLKKSFFPYGSLPPNSFGWGS 185
Query: 152 FPPGCA----DVEPRRCRRTDGKKWRCSRDAVGDQKYCERHINRGRHRSRKHVEGRKA 205
F G + D EP RCRRTDGKKWRCSRDAV DQKYCERHINRGRHRSRK VEG+
Sbjct: 186 FHLGFSGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEGQNG 243
>AT3G13960.1 | chr3:4608526-4610160 FORWARD LENGTH=398
Length = 397
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 64/111 (57%), Gaps = 14/111 (12%)
Query: 105 RGPFTPTQWMELEHQALIYKHIAAN-----------XXXXXXXXXXXXXXXHPWGWGSFP 153
R PFTPTQW ELEHQALIYK++ + GWG +
Sbjct: 14 RPPFTPTQWEELEHQALIYKYMVSGVPVPPELIFSIRRSLDTSLVSRLLPHQSLGWGCYQ 73
Query: 154 PGCA---DVEPRRCRRTDGKKWRCSRDAVGDQKYCERHINRGRHRSRKHVE 201
G D EP RCRRTDGKKWRCSR+A D KYCE+H++RGR+R+RK ++
Sbjct: 74 MGFGRKPDPEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRGRNRARKSLD 124
>AT5G53660.1 | chr5:21794636-21795929 FORWARD LENGTH=366
Length = 365
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
Query: 107 PFTPTQWMELEHQALIYKHIAANXXXXXXXXXXXXXXXHPWGWGSFPPGCADVEPRRCRR 166
PFT Q ELE QA+IYK++ A+ P + D+EP RCRR
Sbjct: 59 PFTNAQLKELERQAMIYKYMIASIPVPFDLLVSSPSSASPCNNKNI---AGDLEPGRCRR 115
Query: 167 TDGKKWRCSRDAVGDQKYCERHINRGRHRSRKHVE 201
TDGKKWRC+++ V + KYCE+H++RGR RSRKHVE
Sbjct: 116 TDGKKWRCAKEVVSNHKYCEKHLHRGRPRSRKHVE 150
>AT3G52910.1 | chr3:19616177-19618268 REVERSE LENGTH=381
Length = 380
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 59/115 (51%), Gaps = 24/115 (20%)
Query: 108 FTPTQWMELEHQALIYKHIAANXX----------XXXXXXXXXXXXXHP----------- 146
F+ QW ELE QALIY+++ A HP
Sbjct: 83 FSWAQWQELELQALIYRYMLAGASVPQELLLPIKKSLLHQSPMHFLHHPLQHSFPHHQPS 142
Query: 147 WGWGSFPPGCADVEPRRCRRTDGKKWRCSRDAVGDQKYCERHINRGRHRSRKHVE 201
W WG G D EP RC+RTDGKKWRCSRD V KYC+RHI+RGR+RSRK VE
Sbjct: 143 WYWGR---GAMDPEPGRCKRTDGKKWRCSRDVVAGHKYCDRHIHRGRNRSRKPVE 194
>AT2G06200.1 | chr2:2426340-2427255 FORWARD LENGTH=245
Length = 244
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 62/116 (53%), Gaps = 23/116 (19%)
Query: 104 VRGPFTPTQWMELEHQALIYKHIAANX---------------XXXXXXXXXXXXXXHP-- 146
R PFT +QW ELE+QAL++K++AAN P
Sbjct: 3 TRIPFTESQWEELENQALVFKYLAANMPVPPHLLFLIKRPFLFSSSSSSSSSSSFFSPTL 62
Query: 147 ---WGWGSFPPGCA---DVEPRRCRRTDGKKWRCSRDAVGDQKYCERHINRGRHRS 196
+GW + G D EP RCRRTDGKKWRCS++A D KYCERH++RG++RS
Sbjct: 63 SPHFGWNVYEMGMGRKIDAEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRS 118
>AT2G36400.1 | chr2:15270300-15272617 REVERSE LENGTH=399
Length = 398
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 56/114 (49%), Gaps = 23/114 (20%)
Query: 108 FTPTQWMELEHQALIYKHIAANXX----------XXXXXXXXXXXXXHP----------W 147
F+ QW ELE QALIY+++ A HP W
Sbjct: 77 FSWAQWQELELQALIYRYMLAGAAVPQELLLPIKKSLLHLSPSYFLHHPLQHLPHYQPAW 136
Query: 148 GWGSFPPGCADVEPRRCRRTDGKKWRCSRDAVGDQKYCERHINRGRHRSRKHVE 201
G D EP RCRRTDGKKWRCSRD KYCERH++RGR+RSRK VE
Sbjct: 137 YLGR---AAMDPEPGRCRRTDGKKWRCSRDVFAGHKYCERHMHRGRNRSRKPVE 187
>AT4G24150.1 | chr4:12535972-12539387 FORWARD LENGTH=494
Length = 493
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 33/45 (73%), Positives = 39/45 (86%)
Query: 157 ADVEPRRCRRTDGKKWRCSRDAVGDQKYCERHINRGRHRSRKHVE 201
AD+EP RC+RTDGKKWRCSR+ + DQKYCERH ++ R RSRKHVE
Sbjct: 242 ADLEPWRCKRTDGKKWRCSRNVIPDQKYCERHTHKSRPRSRKHVE 286
>AT2G45480.1 | chr2:18745583-18747403 FORWARD LENGTH=430
Length = 429
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 33/41 (80%)
Query: 158 DVEPRRCRRTDGKKWRCSRDAVGDQKYCERHINRGRHRSRK 198
+ EP RCRRTDGKKWRCS + +KYCERH++RGR RSRK
Sbjct: 87 ETEPTRCRRTDGKKWRCSNTVLLFEKYCERHMHRGRKRSRK 127
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 157 ADVEPRRCRRTDGKKWRCSRDAVGDQKYCERHINRG 192
D EP RCRRTDGKKWRCS+D + QKYC++H++RG
Sbjct: 304 TDNEPGRCRRTDGKKWRCSKDVLSGQKYCDKHMHRG 339
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.130 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,563,120
Number of extensions: 284804
Number of successful extensions: 822
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 819
Number of HSP's successfully gapped: 10
Length of query: 409
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 308
Effective length of database: 8,337,553
Effective search space: 2567966324
Effective search space used: 2567966324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)