BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0551800 Os11g0551800|AK061812
(106 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G27745.1 | chr4:13840530-13841279 FORWARD LENGTH=107 191 6e-50
AT3G11230.2 | chr3:3516683-3518193 FORWARD LENGTH=163 121 9e-29
AT5G53940.1 | chr5:21897164-21898589 REVERSE LENGTH=130 119 2e-28
AT3G08990.1 | chr3:2743590-2744709 FORWARD LENGTH=129 115 4e-27
AT2G40110.1 | chr2:16748159-16749357 FORWARD LENGTH=131 115 6e-27
AT3G55890.1 | chr3:20740908-20741868 FORWARD LENGTH=122 112 4e-26
AT4G27740.1 | chr4:13839148-13839616 FORWARD LENGTH=106 111 1e-25
>AT4G27745.1 | chr4:13840530-13841279 FORWARD LENGTH=107
Length = 106
Score = 191 bits (485), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 88/106 (83%), Positives = 96/106 (90%)
Query: 1 MAELVGPRVYSCCHCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNISMGPKEDRQLMTGL 60
MA+ +GPR+YSCC+CRNHV LHDDIISKAFQGR GRAFLFSHAMNI +GPKEDR L+TGL
Sbjct: 1 MAQAIGPRLYSCCNCRNHVGLHDDIISKAFQGRTGRAFLFSHAMNIVVGPKEDRNLLTGL 60
Query: 61 HTVADIYCRDCREVLGWKYERAFEESQKYKEGKFIFEKAKIVKENW 106
HTVADI C DC E LGWKYERA+E SQKYKEGKFIFEKAKIVKE+W
Sbjct: 61 HTVADISCVDCNEPLGWKYERAYETSQKYKEGKFIFEKAKIVKEDW 106
>AT3G11230.2 | chr3:3516683-3518193 FORWARD LENGTH=163
Length = 162
Score = 121 bits (303), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 72/94 (76%)
Query: 8 RVYSCCHCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNISMGPKEDRQLMTGLHTVADIY 67
+ YSC HC+ ++ L DD++SK+FQ R+G+A+LFS +N+ G KEDR +MTG+HTV DIY
Sbjct: 45 KSYSCKHCKTNLALCDDVVSKSFQSRHGKAYLFSKVVNVYAGKKEDRMMMTGMHTVVDIY 104
Query: 68 CRDCREVLGWKYERAFEESQKYKEGKFIFEKAKI 101
C C +GWKYE AFE++QKYKEGK + E+ K+
Sbjct: 105 CVKCGSYVGWKYEFAFEKNQKYKEGKSVLERYKV 138
>AT5G53940.1 | chr5:21897164-21898589 REVERSE LENGTH=130
Length = 129
Score = 119 bits (299), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/103 (53%), Positives = 78/103 (75%), Gaps = 1/103 (0%)
Query: 2 AELVGPRVYSCCHCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNISMGPKEDRQLMTGLH 61
EL G R Y C CR H+ L DD++S++F R G+A+LF+ ++NISMGP E+R +++G+H
Sbjct: 7 VELEG-RSYRCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERLMLSGMH 65
Query: 62 TVADIYCRDCREVLGWKYERAFEESQKYKEGKFIFEKAKIVKE 104
TVADI+C C + +GWKYE A E++QKYKEGKF+ E+ +IV E
Sbjct: 66 TVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLERGRIVDE 108
>AT3G08990.1 | chr3:2743590-2744709 FORWARD LENGTH=129
Length = 128
Score = 115 bits (288), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 74/94 (78%)
Query: 9 VYSCCHCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNISMGPKEDRQLMTGLHTVADIYC 68
VYSC +C+ H + +DIISK+F ++GRA+LF + +N+++G KE R ++TG HTVADI+C
Sbjct: 13 VYSCKYCQTHFAVTNDIISKSFHCKHGRAYLFDNVVNVTVGEKEHRVMITGWHTVADIFC 72
Query: 69 RDCREVLGWKYERAFEESQKYKEGKFIFEKAKIV 102
C ++GWKYE A+++SQKYKEGKFI E+ K++
Sbjct: 73 VSCGSLVGWKYEIAYDKSQKYKEGKFILERFKVL 106
>AT2G40110.1 | chr2:16748159-16749357 FORWARD LENGTH=131
Length = 130
Score = 115 bits (287), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 72/94 (76%)
Query: 8 RVYSCCHCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNISMGPKEDRQLMTGLHTVADIY 67
++YSC HC+ H+ ++DIISK+F ++G+A+LF+ N+S+G E+R +MTG HTVADI+
Sbjct: 12 KIYSCKHCKTHLATYEDIISKSFHCKHGKAYLFNKVANVSIGETEERLMMTGKHTVADIF 71
Query: 68 CRDCREVLGWKYERAFEESQKYKEGKFIFEKAKI 101
C C ++GWKYE A E++QKYKEGK + E+ KI
Sbjct: 72 CVSCGSIVGWKYETAHEKNQKYKEGKSVLERFKI 105
>AT3G55890.1 | chr3:20740908-20741868 FORWARD LENGTH=122
Length = 121
Score = 112 bits (280), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 72/101 (71%), Gaps = 1/101 (0%)
Query: 1 MAELVGPRVYSCCHCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNISMGPKEDRQLMTGL 60
M +L G +Y C C+ H+ DI+SK+FQ +NGRA+LF++ +N+S+G KEDR ++TGL
Sbjct: 6 MVDLEG-NIYICKLCKTHLSTDQDIMSKSFQCKNGRAYLFNNVVNVSVGEKEDRMMITGL 64
Query: 61 HTVADIYCRDCREVLGWKYERAFEESQKYKEGKFIFEKAKI 101
H V DI+C C +GWKYE A E+SQKYKEGK + E KI
Sbjct: 65 HNVVDIFCVGCGSNVGWKYEFAHEKSQKYKEGKSVLELYKI 105
>AT4G27740.1 | chr4:13839148-13839616 FORWARD LENGTH=106
Length = 105
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 65/95 (68%)
Query: 9 VYSCCHCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNISMGPKEDRQLMTGLHTVADIYC 68
Y C +C N + L +D+ISK F G +G AF+FSHAMN+ +GPK R+L+TG + VAD+ C
Sbjct: 9 TYFCRNCENPLALGEDLISKKFVGASGPAFMFSHAMNVVVGPKIGRKLITGSYVVADVMC 68
Query: 69 RDCREVLGWKYERAFEESQKYKEGKFIFEKAKIVK 103
C E LGWKY F+ Q+YKEG F+ EK K+ K
Sbjct: 69 SKCGETLGWKYVETFDLKQRYKEGMFVIEKLKLTK 103
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.139 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,354,147
Number of extensions: 84700
Number of successful extensions: 247
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 7
Length of query: 106
Length of database: 11,106,569
Length adjustment: 75
Effective length of query: 31
Effective length of database: 9,050,369
Effective search space: 280561439
Effective search space used: 280561439
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 105 (45.1 bits)