BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0550900 Os11g0550900|AK106291
         (375 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G43680.1  | chr5:17544074-17545354 FORWARD LENGTH=233           55   5e-08

>AT5G43680.1 | chr5:17544074-17545354 FORWARD LENGTH=233
          Length = 232

 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 105/255 (41%), Gaps = 72/255 (28%)

Query: 127 DMIKIARVAGRMTGRAVGRLMLFRRQMDEILEQTAAKQVNKELKDAMTQLDSIRYEVQNL 186
           D+  IAR  GR+ GRA+G + + R  +D +++Q   ++++KE+                 
Sbjct: 24  DLPIIARAGGRLFGRAIGYINMARGHLDGVMKQPQMQEISKEV----------------- 66

Query: 187 SRFTPGQFMRQHNPVGVDHEAEKNDAVDGSALNLEELRHQIRSMVHDEIESFYKTNPDKF 246
                                             ++LR Q+ ++ H    S + ++P   
Sbjct: 67  ----------------------------------QDLRAQVDAISHGARFSLFDSSP--L 90

Query: 247 SGRLDNADT----------VNRSGPVEGKEADVAVIPTMLASKDMKLANTGSTDLHSKAT 296
           + R+DN  T          +  S  VE K+  V        +++   +++ S +LH++AT
Sbjct: 91  TRRVDNQKTQEPSPSTTNGIVTSVNVEEKQKPV---DHYTKAQEFSGSSSASVNLHAQAT 147

Query: 297 MYSRLTESPEMSGSSGHQFKESDGLLNILPISAESAGLLPSRSDKPQGSDXXXXXXXXXX 356
            ++RL+E+  ++G +     +S     +LP+SAE A LLP R +  +GSD          
Sbjct: 148 SFARLSET--VNGKTHSLNSDSP----VLPVSAEMAKLLPQRKESARGSDLMLEAVLEAE 201

Query: 357 XXXXXKSFAQQHHDE 371
                KSF  Q   E
Sbjct: 202 VAHKAKSFFAQAEKE 216



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.132    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,512,658
Number of extensions: 254019
Number of successful extensions: 675
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 675
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 275
Effective length of database: 8,364,969
Effective search space: 2300366475
Effective search space used: 2300366475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)