BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0544600 Os11g0544600|AK064128
(471 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G08310.1 | chr4:5249047-5252139 REVERSE LENGTH=505 124 9e-29
AT1G44780.1 | chr1:16909753-16912060 FORWARD LENGTH=464 124 2e-28
>AT4G08310.1 | chr4:5249047-5252139 REVERSE LENGTH=505
Length = 504
Score = 124 bits (312), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 115/196 (58%), Gaps = 24/196 (12%)
Query: 22 FRARLPDFRKQADSLTLEGVRRALEKDMGLEKHSLDAHKKFIKQCVDKVFSGSDDDNTNN 81
++R+ R +AD+ T EGVRR LE+D+ LEKH+LD HK F+KQ + + +G+++D T+
Sbjct: 42 MQSRVTYLRDKADNFTFEGVRRLLEEDLKLEKHALDVHKSFVKQHLVQCLAGAENDETSE 101
Query: 82 NAPEKDEAKDDRSSKEESE-----------------DAQPTSDSNKISSNADEPVAKSSE 124
N+ E ++ D KE +E D + T DS + +E +KS
Sbjct: 102 NSLETEKKDDVTPVKEAAELSKEHTTKKDGKEDMTGDDEKTKDSPVMGLLTEENTSKSV- 160
Query: 125 TDRDQEGDKDHSSGSDISEATIKNAIVKRASYFRENSETITLQGVRRTLEEDLKLQKKAL 184
+Q D+D ++ ++ IK A+ KR+SY + NSE IT+ +RR LE+DLKL+K +L
Sbjct: 161 --AEQTKDEDK----EVLQSDIKKALRKRSSYIKANSEKITMGLLRRLLEQDLKLEKYSL 214
Query: 185 DAYKSFISTELDNILQ 200
D YK FI+ ELD ILQ
Sbjct: 215 DPYKKFINGELDEILQ 230
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 45/101 (44%)
Query: 321 AYGKRVERLKSIIKSCGMSIAPTVYRKAKMAPESKREACXXXXXXXXXXXXXXSTNPSXX 380
YGKRVE LKSIIKSCGMSI+P+VYRKAK APE KRE S NPS
Sbjct: 342 GYGKRVEHLKSIIKSCGMSISPSVYRKAKQAPEEKREEILIKELKELLAKEGLSANPSEK 401
Query: 381 XXXXXXXXXXXXXXXXGIDMXXXXXXXXXXXXXXFIPLPTP 421
GID F+P P P
Sbjct: 402 EIKEVKKRKERTKELEGIDTSNIVSSSRRRSSASFVPPPKP 442
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 139 SDISEATIKNAIVKRASYFRENSETITLQGVRRTLEEDLKLQKKALDAYKSFISTELDNI 198
+DI E+ I A+ R +Y R+ ++ T +GVRR LEEDLKL+K ALD +KSF+ L
Sbjct: 32 TDI-ESQILAAMQSRVTYLRDKADNFTFEGVRRLLEEDLKLEKHALDVHKSFVKQHLVQC 90
Query: 199 L 199
L
Sbjct: 91 L 91
>AT1G44780.1 | chr1:16909753-16912060 FORWARD LENGTH=464
Length = 463
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 112/184 (60%), Gaps = 15/184 (8%)
Query: 22 FRARLPDFRKQADSLTLEGVRRALEKDMGLEKHSLDAHKKFIKQCVDKVFSGSDDDNTNN 81
R+R+ R +AD TL VRR LE+D+GLEK LD +K F+K+ + K + +++T+
Sbjct: 31 LRSRVTYLRNEADCFTLVSVRRMLEEDIGLEKCDLDVYKSFVKEHLVKCLEEAGNNDTSE 90
Query: 82 NAPEKDEAKDDRSSKE---ESEDAQPTSDSNKISSNADEPVAKSSETDRDQEGDKDHSSG 138
N+ E + D+ +KE +SE+ +P +D+ +E +K D +G+K+
Sbjct: 91 NSQETEREDDEIPTKEVAEQSEEHEPMNDA------GEENTSKREAKDVKGKGNKE---- 140
Query: 139 SDISEATIKNAIVKRASYFRENSETITLQGVRRTLEEDLKLQKKALDAYKSFISTELDNI 198
+ IK A+ KRASY + NSETIT+ +RR LEEDLKL+K++LD +K FI+ ELD +
Sbjct: 141 --TLQRDIKRALRKRASYIKANSETITMASLRRLLEEDLKLEKESLDLFKKFINKELDEV 198
Query: 199 LQEP 202
LQ P
Sbjct: 199 LQLP 202
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 47/105 (44%)
Query: 321 AYGKRVERLKSIIKSCGMSIAPTVYRKAKMAPESKREACXXXXXXXXXXXXXXSTNPSXX 380
YGKRVE LKS+IKSCGMS+ P +Y+KAK AP+ KREA S++PS
Sbjct: 312 VYGKRVEHLKSVIKSCGMSVPPNIYKKAKQAPQEKREAMLIEELEQILAKEGLSSDPSAL 371
Query: 381 XXXXXXXXXXXXXXXXGIDMXXXXXXXXXXXXXXFIPLPTPKIVA 425
GID F P P PK+ A
Sbjct: 372 EIKEVKKRKNISRELEGIDTNNIVWNSRRRSSTSFAPPPKPKVTA 416
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%)
Query: 143 EATIKNAIVKRASYFRENSETITLQGVRRTLEEDLKLQKKALDAYKSFISTELDNILQEP 202
E I A+ R +Y R ++ TL VRR LEED+ L+K LD YKSF+ L L+E
Sbjct: 24 EFKILAALRSRVTYLRNEADCFTLVSVRRMLEEDIGLEKCDLDVYKSFVKEHLVKCLEEA 83
Query: 203 AN 204
N
Sbjct: 84 GN 85
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.304 0.123 0.330
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,089,998
Number of extensions: 268007
Number of successful extensions: 2606
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2653
Number of HSP's successfully gapped: 8
Length of query: 471
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 369
Effective length of database: 8,310,137
Effective search space: 3066440553
Effective search space used: 3066440553
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 113 (48.1 bits)