BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0544000 Os11g0544000|AK066017
(239 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G49140.1 | chr3:18212187-18215557 REVERSE LENGTH=500 110 6e-25
AT5G24060.2 | chr5:8130273-8133269 REVERSE LENGTH=495 101 3e-22
AT3G59300.1 | chr3:21918667-21921877 FORWARD LENGTH=460 53 1e-07
>AT3G49140.1 | chr3:18212187-18215557 REVERSE LENGTH=500
Length = 499
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
Query: 79 ELPPGRGRYHPFEEIAEKLQVDDGEPAHLTDAESARTIVEVNSKATVMISTLIDEGVHER 138
E G+ RYHP EEI L +DG+ + L+ AE+ RTI+EVN+K T+M++ I +GVHE
Sbjct: 89 EKQTGKSRYHPSEEIRASLPQNDGD-SRLSPAETTRTIIEVNNKGTLMLTGSIGDGVHEN 147
Query: 139 IILPEFPYLTDENGDIYFEVDNDDALLESIMGDDKTAHVIIGLDNTQVFADLDLAAASAT 198
I+ P+ PY+TD+NG++YF+V D+ +++S+ ++ VI+G D ++ +++L S +
Sbjct: 148 ILWPDIPYITDQNGNLYFQVKEDEDVMQSVTSENNYVQVIVGFDTMEMIKEMELMGLSDS 207
Query: 199 EF 200
+F
Sbjct: 208 DF 209
>AT5G24060.2 | chr5:8130273-8133269 REVERSE LENGTH=495
Length = 494
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 83/137 (60%), Gaps = 6/137 (4%)
Query: 68 GGAATPEDHMDELPPGRGRYHPFEEIAEKLQVDDGEPAHLTDAESARTIVEVNSKATVMI 127
G A+ P+ P G+ YHP E+I + + + L+ E+ARTI+EVN K T+M+
Sbjct: 76 GSASDPKK-----PTGKSSYHPSEDIRAYVPEKNPGDSRLSPPETARTIIEVNKKGTLML 130
Query: 128 STLIDEGVHERIILPEFPYLTDENGDIYFEV-DNDDALLESIMGDDKTAHVIIGLDNTQV 186
S L+ GVHE I+ P+ PY+TD++G+IYF+V +N+D + + D+ VI+G D ++
Sbjct: 131 SGLLGIGVHENILWPDIPYVTDQHGNIYFQVKENEDIMQTVVTSDNNYVQVIVGFDTMEM 190
Query: 187 FADLDLAAASATEFAQE 203
D++L++ S F E
Sbjct: 191 IKDMELSSPSGIGFGIE 207
>AT3G59300.1 | chr3:21918667-21921877 FORWARD LENGTH=460
Length = 459
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 75 DHMDELPPGRGR-YHPFEEIAEKLQVDDGEPAHLTDAESARTIVEVNSKATVMISTLIDE 133
D+ D +P YHP E++ +V + + L+ +E ART VE NS A ++ I
Sbjct: 84 DYSDSVPDSSFYGYHPLEDLKPSKRVQETK---LSASEVARTTVEANSSAVLVFPGAIHC 140
Query: 134 GVHERIILPEFPYLTDENGDIYFEVDNDDALLE 166
H+ EF Y+ D+ GDI+FE+ +D+ +LE
Sbjct: 141 EPHDHNSWSEFKYVIDDYGDIFFEIPDDENILE 173
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.134 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,974,396
Number of extensions: 154967
Number of successful extensions: 342
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 3
Length of query: 239
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 143
Effective length of database: 8,474,633
Effective search space: 1211872519
Effective search space used: 1211872519
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)