BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0543500 Os11g0543500|AK072076
         (448 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G47900.1  | chr5:19392408-19394963 FORWARD LENGTH=441          478   e-135
AT5G27730.1  | chr5:9820311-9822868 FORWARD LENGTH=473            358   3e-99

>AT5G47900.1 | chr5:19392408-19394963 FORWARD LENGTH=441
          Length = 440

 Score =  478 bits (1231), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 245/428 (57%), Positives = 304/428 (71%), Gaps = 16/428 (3%)

Query: 33  DDDVEAGVLGRDGEAAATTTR--------QRLVSLDVFRGITVALMILVDDVGGIVPAIS 84
           DD+       +D E+A   +R        +RLVSLDVFRG+TVA MILVDDVGGI+P+I+
Sbjct: 15  DDNDHQWREKKDIESALQISRSSSLPPDKERLVSLDVFRGLTVAFMILVDDVGGILPSIN 74

Query: 85  HSPWDGVTLADFVFPFFLFIVGVSLAFAYKKVPDKMLATKKAMLRAVKLFIVGLILQGGF 144
           HSPWDGVTLADFV PFFLFIVGVSLAFAYK +  + +AT+KA++R++KL ++GL LQGGF
Sbjct: 75  HSPWDGVTLADFVMPFFLFIVGVSLAFAYKNLSCRFVATRKALIRSLKLLLLGLFLQGGF 134

Query: 145 FHGIHELTYGVDIRKIRLMGVLQRIAIAYLVVALCEIWLRRVSSGGNIGSGSMLITRYHH 204
            HG++ LTYG+D+ KIRLMG+LQRIAIAYLVVALCEIWL+      N+ S   +I +Y  
Sbjct: 135 IHGLNNLTYGIDVEKIRLMGILQRIAIAYLVVALCEIWLK---GNHNVSSELSMIKKYRF 191

Query: 205 QMFXXXXXXXXXXXXXXXXHVPDWEYEVTSPD--STVKHFL---VKCGVKGDTGPGCNAV 259
                              +VPDWEY++   D  ST+  FL   VKCGV+G TGPGCNAV
Sbjct: 192 HWVVAFVITTIYLSLLYGLYVPDWEYQILKEDQGSTLTTFLNLKVKCGVRGHTGPGCNAV 251

Query: 260 GMIDRSVLGIQHLYAHPVYLKTEQCSMASPRNGPLPPNAPSWCEAPFDPEGLLSSLMAIV 319
           GM+DR  LGIQHLY  PVY +T+QCS+  P NGPLPP+APSWC+APFDPEGLLSSLMA V
Sbjct: 252 GMLDRMFLGIQHLYRKPVYARTKQCSINYPNNGPLPPDAPSWCQAPFDPEGLLSSLMATV 311

Query: 320 TCLIGLQIGHVIVHFKKHNERIKRWSIXXXXXXXXXXXXXXXXXXMNKSLYSLSYTCVTT 379
           TCL+GL  GH+I+HFK H +R+ +W +                  +NK LY+LSY CVT+
Sbjct: 312 TCLVGLHYGHIIIHFKDHKKRLNQWILRSFCLLMLGLALNLFGMHLNKPLYTLSYMCVTS 371

Query: 380 GTAGLFFVAIYLLVDVKGYKRPVLPMEWMGKHALMIFVLVACNVIPVLVQGFYWKEPSNN 439
           G +G    AIYL+VDV GYKR  L +EWMG HAL I+VL+ACN++ +++ GFYWK P NN
Sbjct: 372 GASGFLLSAIYLMVDVYGYKRASLVLEWMGIHALPIYVLIACNLVFLIIHGFYWKNPINN 431

Query: 440 LLKLIGIG 447
           LL LIGIG
Sbjct: 432 LLHLIGIG 439



>AT5G27730.1 | chr5:9820311-9822868 FORWARD LENGTH=473
          Length = 472

 Score =  358 bits (919), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 180/397 (45%), Positives = 246/397 (61%), Gaps = 5/397 (1%)

Query: 52  TRQRLVSLDVFRGITVALMILVDDVGGIVPAISHSPWDGVTLADFVFPFFLFIVGVSLAF 111
            R RL SLD+FRG+TVALMILVDD GG  P I+H+PW+G  LADFV PFFLFIVGVS+A 
Sbjct: 33  NRPRLASLDIFRGLTVALMILVDDAGGDWPMIAHAPWNGCNLADFVMPFFLFIVGVSIAL 92

Query: 112 AYKKVPDKMLATKKAMLRAVKLFIVGLILQGGFFHGIHELTYGVDIRKIRLMGVLQRIAI 171
           + K++ +K  A KK   R  KL   GL+LQGGF H   ELTYGVD+  +R  G+LQRIA+
Sbjct: 93  SLKRISNKFEACKKVGFRTCKLLFWGLLLQGGFSHAPDELTYGVDVTMMRFCGILQRIAL 152

Query: 172 AYLVVALCEIWLRRVSSGGNIGSGSMLITR-YHHQMFXXXXXXXXXXXXXXXXHVPDWEY 230
           +YLVVAL EI   + S   N+ +G   I + Y+                    +VPDWE+
Sbjct: 153 SYLVVALVEI-FTKDSHEENLSTGRFSIFKSYYWHWIVAASVLVIYLATLYGTYVPDWEF 211

Query: 231 EVTSPDSTV--KHFLVKCGVKGDTGPGCNAVGMIDRSVLGIQHLYAHPVYLKTEQCSMAS 288
            V   DS +  K   V CGV+G   P CNAVG +DR VLGI H+Y HP + +++ C+  S
Sbjct: 212 VVYDKDSVLYGKILSVSCGVRGKLNPPCNAVGYVDRQVLGINHMYHHPAWRRSKACTDDS 271

Query: 289 PRNGPLPPNAPSWCEAPFDPEGLLSSLMAIVTCLIGLQIGHVIVHFKKHNERIKRW-SIX 347
           P  G +  +APSWC APF+PEG+LSS+ AI++ +IG+  GH+I+H K H+ R+K W S  
Sbjct: 272 PYEGAIRQDAPSWCRAPFEPEGILSSISAILSTIIGVHFGHIILHLKGHSARLKHWISTG 331

Query: 348 XXXXXXXXXXXXXXXXXMNKSLYSLSYTCVTTGTAGLFFVAIYLLVDVKGYKRPVLPMEW 407
                            +NK LYS SY CVT+G A L F ++Y LVD+  +K   LP++W
Sbjct: 332 LVLLALGLTLHFTHLMPLNKQLYSFSYICVTSGAAALVFSSLYSLVDILEWKHMFLPLKW 391

Query: 408 MGKHALMIFVLVACNVIPVLVQGFYWKEPSNNLLKLI 444
           +G +A++++V+ A  ++     G+Y++ P N L+  I
Sbjct: 392 IGMNAMLVYVMGAEGILAAFFNGWYYRHPHNTLINWI 428



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.141    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,350,036
Number of extensions: 366804
Number of successful extensions: 1062
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1056
Number of HSP's successfully gapped: 2
Length of query: 448
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 346
Effective length of database: 8,310,137
Effective search space: 2875307402
Effective search space used: 2875307402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 113 (48.1 bits)