BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0540100 Os11g0540100|AK102913
         (644 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G36760.1  | chr4:17326688-17329979 FORWARD LENGTH=646          870   0.0  
AT3G05350.1  | chr3:1527103-1533843 REVERSE LENGTH=711            506   e-143

>AT4G36760.1 | chr4:17326688-17329979 FORWARD LENGTH=646
          Length = 645

 Score =  870 bits (2248), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/644 (65%), Positives = 506/644 (78%), Gaps = 13/644 (2%)

Query: 10  LLDELRALMAAHSPPLHALVVPSDDAHQSEYVAERDKRLQFISGFTGIARSAGLALITMK 69
           +L  LR+LMA+HSPPL ALVVPS+D HQSEYV+ RDKR +F+SGF+G   SAGLALIT K
Sbjct: 4   ILSSLRSLMASHSPPLDALVVPSEDYHQSEYVSARDKRREFVSGFSG---SAGLALITKK 60

Query: 70  EALLWTDGRYFLQAEKQLSDHWELMCMGEDPPVEVWIADNLSDEAVIGINPWCISVDTAQ 129
           EA LWTDGRYFLQA +QLSD W LM MGEDP VEVW++DNL +EA IG++ WC+SVDTA 
Sbjct: 61  EARLWTDGRYFLQALQQLSDEWTLMRMGEDPLVEVWMSDNLPEEANIGVDSWCVSVDTAN 120

Query: 130 RYEHAFSKKHQTLFQLSSDLVDEVWKDRPLANTQPVV-HPVEFAGCSVTGXXXXXXXXXX 188
           R+  +F+KK+Q L   ++DLVDEVWK RP +   PVV HP+EFAG SV+           
Sbjct: 121 RWGKSFAKKNQKLITTTTDLVDEVWKSRPPSEMSPVVVHPLEFAGRSVSHKFEDLRAKLK 180

Query: 189 XXXARGIIIAALDEVAWLYNIRGNDVHYSPVVHSYSIVTLHSAFFYVDNRKVSVE--SYM 246
              ARG++IAALDEVAWLYNIRG DV Y PVVH+++I+T  SAF YVD +KVS E  SY 
Sbjct: 181 QEGARGLVIAALDEVAWLYNIRGTDVAYCPVVHAFAILTTDSAFLYVDKKKVSDEANSYF 240

Query: 247 SENGIDIRDYNMVQSDVSLLASGQLKGS-AVNGSSHEG-NGMNDNS----KILID-NSCC 299
           +  G+++R+Y  V SDV+LLAS +L  S A     HE    M  +S    ++ +D  SCC
Sbjct: 241 NGLGVEVREYTDVISDVALLASDRLISSFASKTVQHEAAKDMEIDSDQPDRLWVDPASCC 300

Query: 300 LALYSKLDEDQVLILQSPVALSKAVKNPVELDGLRKAHIRDGVAVVQYLAWLDNQMQENY 359
            ALYSKLD ++VL+  SP++LSKA+KNPVEL+G++ AH+RDG AVVQYL WLDNQMQE Y
Sbjct: 301 YALYSKLDAEKVLLQPSPISLSKALKNPVELEGIKNAHVRDGAAVVQYLVWLDNQMQELY 360

Query: 360 GASGYFSGAKGSQKKEHVEVKLTEVSVSDKLEGFRAAKEYFKGPSFPMISAVGPNATILH 419
           GASGYF  A+ S+KK     KLTEV+VSDKLE  RA+KE+F+G SFP IS+VG NA ++H
Sbjct: 361 GASGYFLEAEASKKKPSETSKLTEVTVSDKLESLRASKEHFRGLSFPTISSVGSNAAVIH 420

Query: 420 YSPEASSCAELDTDKIYLFDTGAQYLDGTTDITRTVHFGKPSEHEKSCYTAVLKGHIALD 479
           YSPE  +CAE+D DKIYL D+GAQYLDGTTDITRTVHFGKPS HEK CYTAV KGH+AL 
Sbjct: 421 YSPEPEACAEMDPDKIYLCDSGAQYLDGTTDITRTVHFGKPSAHEKECYTAVFKGHVALG 480

Query: 480 TAVFPNGTTGHALDILARTPLWKSGLDYRHGTGHGVGSYLTVHEGPHQISFRPSARNVPL 539
            A FP GT G+ LDILAR PLWK GLDYRHGTGHGVGSYL VHEGPHQ+SFRPSARNVPL
Sbjct: 481 NARFPKGTNGYTLDILARAPLWKYGLDYRHGTGHGVGSYLCVHEGPHQVSFRPSARNVPL 540

Query: 540 QASMTVTDEPGYYQDGSFGIRLENVLIVQDANTKFNFGDKGYLAFEHITWAPYQTKLIDA 599
           QA+MTVTDEPGYY+DG+FGIRLENVL+V DA T+FNFGDKGYL FEHITWAPYQ KLID 
Sbjct: 541 QATMTVTDEPGYYEDGNFGIRLENVLVVNDAETEFNFGDKGYLQFEHITWAPYQVKLIDL 600

Query: 600 TLLAPAEIEWVNTYHSDCRRILQPYLNEQEKEWLRKATEPITVS 643
             L   EI+W+NTYHS C+ IL P++N+ E EWL+KATEP++VS
Sbjct: 601 DELTREEIDWLNTYHSKCKDILAPFMNQTEMEWLKKATEPVSVS 644



>AT3G05350.1 | chr3:1527103-1533843 REVERSE LENGTH=711
          Length = 710

 Score =  506 bits (1302), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 274/649 (42%), Positives = 388/649 (59%), Gaps = 43/649 (6%)

Query: 11  LDELRALMAAHSPPLHALVVPSDDAHQSEYVAERDKRLQFISGFTGIARSAGLALITMKE 70
           L  +R L +     + A ++PS DAHQSE++AE   R  +ISGFTG   SAG A++T  +
Sbjct: 83  LSSIRRLFSEPGVGIDAYIIPSQDAHQSEFIAECYARRAYISGFTG---SAGTAVVTKDK 139

Query: 71  ALLWTDGRYFLQAEKQLSDHWELMCMGED--PPVEVWIADNLSDEAVIGINPWCISVDTA 128
           A LWTDGRYFLQAEKQL+  W LM  G    P    WIAD L+    +GI+P+  S D A
Sbjct: 140 AALWTDGRYFLQAEKQLNSSWILMRAGNPGVPTASEWIADVLAPGGRVGIDPFLFSADAA 199

Query: 129 QRYEHAFSKK-HQTLFQLSSDLVDEVWKD-RPLANTQPV-VHPVEFAGCSVTGXXXXXXX 185
           +  +   +KK H+ ++  + +LVDE+WKD RP   ++ + +H +++AG  V         
Sbjct: 200 EELKEVIAKKNHELVYLYNVNLVDEIWKDSRPKPPSRQIRIHDLKYAGLDVASKLLSLRN 259

Query: 186 XXXXXXARGIIIAALDEVAWLYNIRGNDVHYSPVVHSYSIVTLHSAFFYVDNRKVSVE-- 243
                    I+I+ LDE+AW+ N+RG+DV +SPV+++Y IV +  A  +VDN KV+VE  
Sbjct: 260 QIMDAGTSAIVISMLDEIAWVLNLRGSDVPHSPVMYAYLIVEVDQAQLFVDNSKVTVEVK 319

Query: 244 SYMSENGIDIRDYN-MVQSDVSLLASGQ---LKGSAVN-------GSSHEGNGMNDNSKI 292
            ++   GI++R Y+ ++Q   SL A G    +  S +N        S+ E    N  S+ 
Sbjct: 320 DHLKNAGIELRPYDSILQGIDSLAARGAQLLMDPSTLNVAIISTYKSACERYSRNFESEA 379

Query: 293 LIDNSCCLALYSKLDEDQVLILQSPVALSKAVKNPVELDGLRKAHIRDGVAVVQYLAWLD 352
            +      +          + +QSP++ +KA+KN  EL G++ +H+RD  A+  + AWL+
Sbjct: 380 KVKTKFTDSSSGYTANPSGIYMQSPISWAKAIKNDAELKGMKNSHLRDAAALAHFWAWLE 439

Query: 353 NQMQENYGASGYFSGAKGSQKKEHVEVKLTEVSVSDKLEGFRAAKEYFKGPSFPMISAVG 412
            ++ +N                      LTEV V+D+L  FR+ ++ F   SF  IS  G
Sbjct: 440 EEVHKN--------------------ANLTEVDVADRLLEFRSMQDGFMDTSFDTISGSG 479

Query: 413 PNATILHYSPEASSCAELDTDKIYLFDTGAQYLDGTTDITRTVHFGKPSEHEKSCYTAVL 472
            N  I+HY PE  SC+ +D  K++L D+GAQY+DGTTDITRTVHF +PS  EK C+T VL
Sbjct: 480 ANGAIIHYKPEPESCSRVDPQKLFLLDSGAQYVDGTTDITRTVHFSEPSAREKECFTRVL 539

Query: 473 KGHIALDTAVFPNGTTGHALDILARTPLWKSGLDYRHGTGHGVGSYLTVHEGPHQISFRP 532
           +GHIALD AVFP GT G  LD  AR+ LWK GLDYRHGTGHGVG+ L VHEGP  ISFR 
Sbjct: 540 QGHIALDQAVFPEGTPGFVLDGFARSSLWKIGLDYRHGTGHGVGAALNVHEGPQSISFR- 598

Query: 533 SARNVPLQASMTVTDEPGYYQDGSFGIRLENVLIVQDANTKFNFGDKGYLAFEHITWAPY 592
                PLQ  M V++EPGYY+D +FGIR+EN+L V+DA T   FG   YL FE +T+ P 
Sbjct: 599 YGNMTPLQNGMIVSNEPGYYEDHAFGIRIENLLHVRDAETPNRFGGATYLGFEKLTFFPI 658

Query: 593 QTKLIDATLLAPAEIEWVNTYHSDCRRILQPYL-NEQEKEWLRKATEPI 640
           QTK++D +LL+  E++W+N+YH++    + P L     ++WL   T P+
Sbjct: 659 QTKMVDVSLLSDTEVDWLNSYHAEVWEKVSPLLEGSTTQQWLWNNTRPL 707



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,318,370
Number of extensions: 609544
Number of successful extensions: 1314
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1304
Number of HSP's successfully gapped: 2
Length of query: 644
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 539
Effective length of database: 8,227,889
Effective search space: 4434832171
Effective search space used: 4434832171
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)