BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0536000 Os11g0536000|J065195B18
         (280 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28190.1  | chr1:9847015-9847815 REVERSE LENGTH=267             74   1e-13

>AT1G28190.1 | chr1:9847015-9847815 REVERSE LENGTH=267
          Length = 266

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 78/179 (43%), Gaps = 14/179 (7%)

Query: 49  VRLVGSDGKVRTYRRPVTARELMQQHPRHLVCRSDALLIGEKIPAVAPGEVLEPGHAYFL 108
           ++LV SDG ++ Y RPV   EL +  P+H +CRSD L IG+K P ++  E L+ G  YFL
Sbjct: 39  IKLVRSDGSLQVYDRPVVVSELTKDFPKHKICRSDLLYIGQKTPVLSETETLKLGLNYFL 98

Query: 109 LPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKQQQRPFELLRTASGT-LQIKFSXXXXX 167
           LP+                             +QQ +PF + +   G  L+I+ S     
Sbjct: 99  LPSDFFKNDLSFLTIATLKTPQNGGVLVKKT-QQQPQPFLIQKGEKGERLRIRVSEEFVS 157

Query: 168 XXXXXXXXXXXXXTNPPVLRGDK---------KLEKEYEELVGYSKARRWSPKLDTIQE 217
                               G +         KL+K+Y +LVG    RRW PKL+TI E
Sbjct: 158 ELMMEGKKNRVNEEEEEEEGGGEGEGRVCTTVKLKKDYVQLVGL---RRWKPKLETITE 213



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,032,182
Number of extensions: 72155
Number of successful extensions: 173
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 183
Effective length of database: 8,447,217
Effective search space: 1545840711
Effective search space used: 1545840711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)