BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0531700 Os11g0531700|AK059751
(246 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G26690.1 | chr3:9804418-9805398 REVERSE LENGTH=203 191 4e-49
AT1G12880.1 | chr1:4390036-4391046 FORWARD LENGTH=204 189 2e-48
AT3G12600.1 | chr3:4004809-4005995 FORWARD LENGTH=181 128 2e-30
AT1G14860.1 | chr1:5124993-5125805 FORWARD LENGTH=177 126 9e-30
AT2G01670.1 | chr2:296889-297818 REVERSE LENGTH=183 126 1e-29
AT1G18300.1 | chr1:6299841-6300799 FORWARD LENGTH=208 125 1e-29
AT1G73540.1 | chr1:27645880-27646571 REVERSE LENGTH=199 116 1e-26
>AT3G26690.1 | chr3:9804418-9805398 REVERSE LENGTH=203
Length = 202
Score = 191 bits (484), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 96/170 (56%), Positives = 120/170 (70%), Gaps = 6/170 (3%)
Query: 38 MNMACARQGRLRQRYEGCYRLVSGCIPYMIKEDGENSSSSLQDDDHVLERLQVLMISTPK 97
M+ AR GR QRY+ +RLVSGCIPY + +D E S+S+ ++ +LQVLMIS+P
Sbjct: 1 MSNLSARTGRDHQRYDNNFRLVSGCIPYRLVKDEEEDSTSVDFEN----KLQVLMISSPN 56
Query: 98 RSDLIFPKGGWEDDESIGEAACREAFEEAGVKGVLSGTPLGEWIFKSKSK--QNSCGLQG 155
R DL+FPKGGWEDDE++ EAA REA EEAGVKG+L PLG W F+SKS + C L G
Sbjct: 57 RHDLVFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVWEFRSKSSSVEADCCLGG 116
Query: 156 ACKGYMFALQVTELLESWPEQTTHGRRWVPVEEAYGLCRYDWMREALDKL 205
CKGYMFAL+V E L WPEQ RRW+ V+EA LCRY+WM+ AL++
Sbjct: 117 GCKGYMFALEVKEELAIWPEQDDRERRWLNVKEALELCRYEWMQSALEEF 166
>AT1G12880.1 | chr1:4390036-4391046 FORWARD LENGTH=204
Length = 203
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 97/187 (51%), Positives = 122/187 (65%), Gaps = 7/187 (3%)
Query: 38 MNMACARQGRLRQRYEGCYRLVSGCIPYMIKEDGENSSSSLQDDDHVLERLQVLMISTPK 97
M++ +R GR RQRY+ +RLVSGCIPY + + E S D + +L+VLM+S+P
Sbjct: 1 MSVLSSRTGRDRQRYDNNFRLVSGCIPYRLMKADETEEDSGVD---FVNKLEVLMVSSPN 57
Query: 98 RSDLIFPKGGWEDDESIGEAACREAFEEAGVKGVLSGTPLGEWIFKSKSKQNSCGLQGAC 157
R DL+FPKGGWEDDE++ EAA REA EEAGVKG+L PLG W F+SKS G C
Sbjct: 58 RHDLVFPKGGWEDDETVLEAASREAIEEAGVKGILRELPLGVWEFRSKSSTVEDECLGGC 117
Query: 158 KGYMFALQVTELLESWPEQTTHGRRWVPVEEAYGLCRYDWMREALDKLKEQLLFAAGDDL 217
KGYMFAL+VTE LE WPE+ RRW+ V+EA LCRY+WM+ AL E+ L D+
Sbjct: 118 KGYMFALKVTEELEDWPERKNRERRWLTVKEALELCRYEWMQRAL----EEFLRVMEDER 173
Query: 218 RASPSPE 224
R E
Sbjct: 174 RLRTEEE 180
>AT3G12600.1 | chr3:4004809-4005995 FORWARD LENGTH=181
Length = 180
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/161 (49%), Positives = 106/161 (65%), Gaps = 9/161 (5%)
Query: 43 ARQGRLRQRYEGCYRLVSGCIPY-MIKEDGENSSSSLQDDDHVLERLQVLMISTPKRSDL 101
AR GRL+QRYE RLV+GCIP+ + D + +S S + +QVLMIS+ L
Sbjct: 6 ARTGRLQQRYEDGSRLVAGCIPFRYVNSDKDGNSESGK-------VIQVLMISSSSGPGL 58
Query: 102 IFPKGGWEDDESIGEAACREAFEEAGVKGVLSGTPLGEWIFKSKSKQNSCGLQGACKGYM 161
+FPKGGWE+DE++ EAA REA EEAGV+G+L LG + FKSKS Q+ +G CK M
Sbjct: 59 LFPKGGWENDETVREAAAREAVEEAGVRGILMDF-LGNYEFKSKSHQDEFSPEGLCKAAM 117
Query: 162 FALQVTELLESWPEQTTHGRRWVPVEEAYGLCRYDWMREAL 202
+AL V E L +WPE T R+W+ +EEA CR+ WM++AL
Sbjct: 118 YALYVKEELATWPEHETRTRKWLTIEEAVESCRHPWMKDAL 158
>AT1G14860.1 | chr1:5124993-5125805 FORWARD LENGTH=177
Length = 176
Score = 126 bits (317), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 99/172 (57%), Gaps = 18/172 (10%)
Query: 40 MAC--ARQGRLRQRYEGCYRLVSGCIPYMIKEDGENSSSSLQDDDHVLERLQVLMISTPK 97
M C +R GR QRY R V GCIPY +K + D + + +VL+IS+ K
Sbjct: 1 MVCLVSRTGRQSQRYNKGRRQVVGCIPYRLK---------ISSDGTISDEFEVLVISSQK 51
Query: 98 RSDLIFPKGGWEDDESIGEAACREAFEEAGVKGVLSGTPLGEWIFKSKSKQNSCGLQGAC 157
L+FPKGGWE DES+ EAA RE+ EEAGV G + LG+W F SKSK
Sbjct: 52 GHALMFPKGGWELDESVEEAASRESLEEAGVVGNVE-RQLGKWDFLSKSKGT------FY 104
Query: 158 KGYMFALQVTELLESWPEQTTHGRRWVPVEEAYGLCRYDWMREALDKLKEQL 209
+G+MF + V E LE WPEQ R W+ V+EA CR WM+EALD L ++L
Sbjct: 105 EGFMFPMLVKEELELWPEQHLRQRIWMKVDEARDACRDWWMKEALDVLVQRL 156
>AT2G01670.1 | chr2:296889-297818 REVERSE LENGTH=183
Length = 182
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 98/173 (56%), Gaps = 18/173 (10%)
Query: 39 NMAC--ARQGRLRQRYEGCYRLVSGCIPYMIKEDGENSSSSLQDDDHVLERLQVLMISTP 96
M C +R GR QRY R V GC+PY K L +D + + ++VL+IS+
Sbjct: 5 KMVCLASRTGRQFQRYNKGRRQVVGCVPYRFK---------LSNDGKISDEVEVLVISSQ 55
Query: 97 KRSDLIFPKGGWEDDESIGEAACREAFEEAGVKGVLSGTPLGEWIFKSKSKQNSCGLQGA 156
K L+FPKGGWE DES+ EAA RE EEAGV G + LG+W F SKS+
Sbjct: 56 KGHALMFPKGGWELDESVEEAASRECLEEAGVLGNVE-HQLGKWDFLSKSRGT------Y 108
Query: 157 CKGYMFALQVTELLESWPEQTTHGRRWVPVEEAYGLCRYDWMREALDKLKEQL 209
+G MF + VTE LE WPEQ R W+ V EA CR WM+EALD L E+L
Sbjct: 109 YEGLMFPMLVTEQLELWPEQHVRQRIWMNVTEAREACRDWWMKEALDVLVERL 161
>AT1G18300.1 | chr1:6299841-6300799 FORWARD LENGTH=208
Length = 207
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 98/176 (55%), Gaps = 16/176 (9%)
Query: 29 KMAPSSPPAMNMACARQGRLRQRYEGC-YRLVSGCIPYMIKEDGENSSSSLQDDDHVLER 87
K+ P+ + +R GR QRY+ YR V GC+PY K+ N + +
Sbjct: 31 KVVPAQIEKVVSLVSRTGRDLQRYDHAGYRQVVGCVPYRYKKQEVNGVET--------QV 82
Query: 88 LQVLMISTPKRSDLIFPKGGWEDDESIGEAACREAFEEAGVKGVLSGTPLGEWIFKSKSK 147
+QVL++S K ++FPKGGWE DES+ EAA RE EEAGV G L LG+W +KSK
Sbjct: 83 IQVLLVSAQKGKGMLFPKGGWETDESMEEAALRETIEEAGVTGELE-EKLGKWQYKSKRH 141
Query: 148 QNSCGLQGACKGYMFALQVTELLESWPEQTTHGRRWVPVEEAYGLCRYDWMREALD 203
GYMFAL V++ E WPE RRWV ++EA +C+ WMREAL+
Sbjct: 142 SI------IHDGYMFALLVSQEFERWPEAEMRQRRWVSLDEAREVCQNWWMREALE 191
>AT1G73540.1 | chr1:27645880-27646571 REVERSE LENGTH=199
Length = 198
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 96/180 (53%), Gaps = 24/180 (13%)
Query: 28 EKMAPSSPPAMNMA--CARQGRLRQRYEGC-YRLVSGCIPYMIKEDGENSSSSLQDDDHV 84
+K+ P P+ + +R GR QRY YR V GC+PY K+ G
Sbjct: 29 KKIVPVPTPSEKVVSLVSRTGRDLQRYNTAGYRQVVGCVPYRYKKHGGGE---------- 78
Query: 85 LERLQVLMISTPKRSD-LIFPKGGWEDDESIGEAACREAFEEAGVKGVLSGTPLGEWIFK 143
++VL+IS K+ ++ PKGGWE DESI EAA RE EEAGV G L + LG+W +K
Sbjct: 79 ---IEVLLISAQKKGKGMLLPKGGWEIDESIEEAALRETIEEAGVTGQLEES-LGKWQYK 134
Query: 144 SKSKQNSCGLQGACKGYMFALQVTELLESWPEQTTHGRRWVPVEEAYGLCRYDWMREALD 203
SK G+MF L V++ E WPE R+WV + EA LC+ WMREAL+
Sbjct: 135 SKRHTM------IHDGHMFPLLVSQQFEIWPESEFRQRKWVSLSEAIELCQNSWMREALE 188
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,823,410
Number of extensions: 239855
Number of successful extensions: 544
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 530
Number of HSP's successfully gapped: 7
Length of query: 246
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 150
Effective length of database: 8,474,633
Effective search space: 1271194950
Effective search space used: 1271194950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)