BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0525800 Os11g0525800|AK059719
(197 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38130.1 | chr2:15978639-15980145 REVERSE LENGTH=191 277 3e-75
AT5G13780.1 | chr5:4447610-4448603 REVERSE LENGTH=193 67 6e-12
AT5G11340.1 | chr5:3619226-3621068 FORWARD LENGTH=165 59 2e-09
>AT2G38130.1 | chr2:15978639-15980145 REVERSE LENGTH=191
Length = 190
Score = 277 bits (708), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 132/155 (85%), Positives = 143/155 (92%), Gaps = 2/155 (1%)
Query: 19 GEIAYVSYGGEHHLPLVMSLVDEELSEPYSIFTYRYFVYLWPQLTFLAFDPKDGKCVGTV 78
GEI Y SY GEHHLPL+MSLVD+ELSEPYSIFTYRYFVYLWPQL FLAF GKCVGT+
Sbjct: 14 GEIEYTSYAGEHHLPLIMSLVDQELSEPYSIFTYRYFVYLWPQLCFLAFH--KGKCVGTI 71
Query: 79 VCKMGEHRGAFRGYIAMLVVLKPYRGRGIATELVTRSIRVMMESGCEEVTLEAEVTNKGA 138
VCKMG+HR FRGYIAMLVV+KPYRGRGIA+ELVTR+I+ MMESGCEEVTLEAEV+NKGA
Sbjct: 72 VCKMGDHRQTFRGYIAMLVVIKPYRGRGIASELVTRAIKAMMESGCEEVTLEAEVSNKGA 131
Query: 139 LALYGRLGFIRAKRLYRYYLNGVDAFRLKLLFPRP 173
LALYGRLGFIRAKRLY YYLNG+DAFRLKLLFP+P
Sbjct: 132 LALYGRLGFIRAKRLYHYYLNGMDAFRLKLLFPKP 166
>AT5G13780.1 | chr5:4447610-4448603 REVERSE LENGTH=193
Length = 192
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 3/127 (2%)
Query: 43 LSEPYSIFTYRYFVYLWPQLTFLAFDPKDGKCVGTVVCKMGEHRGAFRGYIAMLVVLKPY 102
L E Y + Y Y + WPQL ++A D +G+ VG V+ KM E G+I L VL+ +
Sbjct: 23 LPENYQMKYYLYHILSWPQLLYVAEDY-NGRIVGYVLAKMEEESNECHGHITSLAVLRTH 81
Query: 103 RGRGIATELVTRSIRVMMES-GCEEVTLEAEVTNKGALALYGR-LGFIRAKRLYRYYLNG 160
R G+AT+L+T + M + E V+L +N+ A LY LG+ +YY +G
Sbjct: 82 RKLGLATKLMTAAQAAMEQVYEAEYVSLHVRRSNRAAFNLYTETLGYKINDVEAKYYADG 141
Query: 161 VDAFRLK 167
DA+ ++
Sbjct: 142 EDAYDMR 148
>AT5G11340.1 | chr5:3619226-3621068 FORWARD LENGTH=165
Length = 164
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 74 CVGTVVCKM-GEHRGAFRGYIAMLVVLKPYRGRGIATELVTRSIRVMMESGCEEVTLEAE 132
CVG + C++ + GA R YI L VL PYRG GI + L+ + + + E+ L +
Sbjct: 58 CVGAIACRLEKKESGAMRVYIMTLGVLAPYRGIGIGSNLLNHVLDMCSKQNMCEIYLHVQ 117
Query: 133 VTNKGALALYGRLGFIRAKRLYRYYLN 159
N+ A+ Y + GF + YY+N
Sbjct: 118 TNNEDAIKFYKKFGFEITDTIQNYYIN 144
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.141 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,397,576
Number of extensions: 179323
Number of successful extensions: 369
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 3
Length of query: 197
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 104
Effective length of database: 8,556,881
Effective search space: 889915624
Effective search space used: 889915624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)