BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0507400 Os11g0507400|AK120224
         (569 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26950.1  | chr3:9941202-9943411 REVERSE LENGTH=549            550   e-157

>AT3G26950.1 | chr3:9941202-9943411 REVERSE LENGTH=549
          Length = 548

 Score =  550 bits (1417), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 263/474 (55%), Positives = 334/474 (70%), Gaps = 5/474 (1%)

Query: 88  VERMGEEAAGRGSPEAASLRVRELIRRHFLLHGASRVRELPAYEFCKQGFVLGKASEAGF 147
           VE MG E  G    +  SLRVR++I RHF ++GAS +RELP  +FC+ G+VLGK +EAGF
Sbjct: 79  VEEMGSEFDGGFVDQ--SLRVRDVIHRHFQINGASAIRELPPEQFCRHGYVLGKTAEAGF 136

Query: 148 GNEMYKILTAAALSVMLNRSLIIGQTRGLYPFGEYISYTNHSFTIGEVKHLWRKNRCART 207
           GNEMYKILT+AALS+MLNRSLIIGQTRG YPFG+YI+Y+N +FT+ EVKHLWR+N C + 
Sbjct: 137 GNEMYKILTSAALSIMLNRSLIIGQTRGKYPFGDYIAYSNATFTMSEVKHLWRQNGCVKK 196

Query: 208 YGRNLSMRVDNFEHPTETNVLCSDWNSWKDPIIWFDGTTDAVGIQFFLKNVHARMKTAAS 267
           Y R L MR+D+FE P ++NVLCS+W  W++ IIWF GTTDAV  QFFLKNVH  M+ AA 
Sbjct: 197 YKRRLVMRLDDFEKPAKSNVLCSNWKKWEEAIIWFQGTTDAVAAQFFLKNVHPEMRAAAF 256

Query: 268 SLFGSPGSLRARPNTFGELMQVIISPSQTVEKAVQWAL-KGSSPDIVLHMRMMTNRPVRA 326
            LFG  G+   R N FGELM  +ISP++ V++AV W L +   PDI +HMRM+ ++ VR 
Sbjct: 257 ELFGEQGNSAPRGNVFGELMMSLISPTKDVKEAVDWVLHETGDPDISVHMRMLMSKSVRP 316

Query: 327 RKAAVNCIKRAIEICHLKGTPRVAVISDTPGFAKDIKQDISEFAEVIYFDHKKFSRSFDL 386
            +AA+NC+ +AI    +   PRV ++SDTP   K IK +IS  AEV++FD+K F      
Sbjct: 317 MRAAINCLGKAINRLGIP-NPRVVIVSDTPSVVKIIKTNISTIAEVLHFDYKLFRGDIAQ 375

Query: 387 EITGSEKALDFRSRDWGSAPRWAAFVDFFLASQARYAVVTGAHRRVGTTYXXXXXXXXXX 446
              G    LDFR +DWG APRW AFVDFFLA +A++AV++GA+RRVGTTY          
Sbjct: 376 RGRGLP-MLDFRIKDWGPAPRWVAFVDFFLACRAKHAVISGANRRVGTTYAQLVAALAAA 434

Query: 447 NRFGRESSGTNFTFLSSVHSNLLVDGLSSQGGWGHIWNRYAGPLSCQHQQHQCALTPLLA 506
           N     SS ++F FLSS  SNLL DGL +Q GWGH+WNRYAGPLSC  Q +QCA TPL  
Sbjct: 435 NSLKDGSSNSSFAFLSSFQSNLLADGLKNQVGWGHVWNRYAGPLSCPKQPNQCAFTPLAP 494

Query: 507 PAWWDGQWQSPIPRDVRRLLEYGVRLSNTGEVDERHLMSYCRSRKDHVKRYRVL 560
           P WWDG WQSPIPRD RRL  +G+ LS  G V+E    +YC ++K++V    ++
Sbjct: 495 PGWWDGIWQSPIPRDTRRLAAFGIELSGFGTVNEDRFHAYCSAKKEYVSTVTII 548



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.134    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,947,065
Number of extensions: 440926
Number of successful extensions: 904
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 901
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 465
Effective length of database: 8,255,305
Effective search space: 3838716825
Effective search space used: 3838716825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)