BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0503400 Os11g0503400|AK066621
         (502 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14280.1  | chr4:8222518-8225074 FORWARD LENGTH=799             55   1e-07

>AT4G14280.1 | chr4:8222518-8225074 FORWARD LENGTH=799
          Length = 798

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 8/106 (7%)

Query: 1   MLGWTDPADREIRMLAAIIVGHVAS----NINLSQFPGALQSIGSLLDP-RDDLSFYDQ- 54
           ML W D    ++RM AA I+  +AS    ++ ++  PGA++SI SLL+  RD     D+ 
Sbjct: 359 MLNWRDKNQEDVRMSAAEILSRLASKKQNSLRVAGIPGAIESISSLLESTRDSGEATDEI 418

Query: 55  DDQHDHDKGMGRCQLLVQGLLVIERLTCDHNNCILICRDHCLLSHI 100
            +Q  +   +     L  GLL+++RL  DH NC  I +   LLS I
Sbjct: 419 GEQSINHSNLWTLNNL--GLLILKRLARDHENCGKIGKTKGLLSKI 462



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,719,340
Number of extensions: 373320
Number of successful extensions: 967
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 968
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 399
Effective length of database: 8,282,721
Effective search space: 3304805679
Effective search space used: 3304805679
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)