BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0491400 Os11g0491400|AK068341
         (427 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55280.1  | chr1:20623099-20624533 REVERSE LENGTH=391          196   2e-50

>AT1G55280.1 | chr1:20623099-20624533 REVERSE LENGTH=391
          Length = 390

 Score =  196 bits (499), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 143/399 (35%), Positives = 215/399 (53%), Gaps = 30/399 (7%)

Query: 22  WLSQNGCPRMCYHIPVNIRKLRKQNRRQRV-ITLSKSSALQDPVSSVKPSRLLQTDELRI 80
           W ++N  P   +H     R+L  + RR R  +  SKSS  QD  S  +P RLL  +E+++
Sbjct: 15  WFTKN--PLNQFH---KRRQLSYRIRRFRFGVICSKSSDYQDFQSYARPLRLLPAEEVKV 69

Query: 81  FHNSVPEEIISTVRLEESDAFYMLELSTSREFSSSLLDKNAAILICIIDANGDSLLQRVP 140
           F  + P   +S     ES + Y ++L TS  F S + D NA +LIC+ID  GDS+LQ +P
Sbjct: 70  FRGN-PSFTVS-----ESRSLYKVKLQTSNLFGSGISDMNARVLICLIDEKGDSVLQTIP 123

Query: 141 AAYCNHSAQGREAEKLLPFQSGSVDVVTFRGSKLQRIKEIWVGLESGSWRIDNLSLKVIH 200
               +   +  E  +   FQ GS+D  +F G KL +I+  W+GLESG WR+  +SL V++
Sbjct: 124 PNLSSLDPEVVENGESFRFQRGSLDEFSFEGPKLGKIRAFWIGLESGQWRVGRVSLWVVN 183

Query: 201 GQLNTPPDLEETPELKFNGLQYTFDKLSMLLGEDG-ASVVEARPVAVTDLTGISLSDLQE 259
                 P  +ET E K    +Y F+   +LLGE    S+VE RP  +T+     L+D  +
Sbjct: 184 ------PRGKET-EAKTFCYRYDFEVDELLLGESSDLSMVELRPSRITE-----LADSDQ 231

Query: 260 GQLSSASTASSILEMKEDGLKEYADLKQSLLLYDLAIVITGFSAFTLASNDSAALSFXXX 319
              SSA      +   E+ ++EYA+LK SLLLYD  +++ G   F+ +  +++A++F   
Sbjct: 232 ISSSSALNLDRTMVSNEESMEEYANLKLSLLLYDAVLILLGSLVFSFSLGENSAIAFFFG 291

Query: 320 XXXXXXXXXXXQKSVDGLPALNSPSEAGSAQPSVKGFSGIRRPWLILSLLMVAGAVALKY 379
                      Q+SVD L    S S   S Q  + G  G++ P L L+L +    +A++ 
Sbjct: 292 GTMGFLYLLLLQRSVDELQVPGSSSSENSNQ-ILSG--GLKIPVLSLALAIGLTVLAMRG 348

Query: 380 GAGGD--KLEMTPVELFVGTAGFLANKVAIVLAAFKPLQ 416
             GG+     +TP E+ VGT GFL  KVA++LAAFKPL+
Sbjct: 349 HIGGEMTAFAVTPKEIVVGTLGFLVCKVAVILAAFKPLK 387



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,386,150
Number of extensions: 326932
Number of successful extensions: 853
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 850
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 326
Effective length of database: 8,337,553
Effective search space: 2718042278
Effective search space used: 2718042278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)