BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0487100 Os11g0487100|J065058M03
(368 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G51920.1 | chr5:21097202-21098914 REVERSE LENGTH=571 80 1e-15
AT4G37100.1 | chr4:17479173-17481863 REVERSE LENGTH=897 73 3e-13
AT2G23520.1 | chr2:10014256-10016943 REVERSE LENGTH=896 72 5e-13
AT5G66950.1 | chr5:26733333-26735945 FORWARD LENGTH=871 72 5e-13
AT4G22980.1 | chr4:12043974-12045653 REVERSE LENGTH=560 67 1e-11
>AT5G51920.1 | chr5:21097202-21098914 REVERSE LENGTH=571
Length = 570
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 18/189 (9%)
Query: 178 LADDDDDYLVLFAPTPRDVLVLVGESYPFFRGNYYMSILAGGEADGGDCVRAFAAYKDAK 237
L ++DY ++F LV ESYPF +++ E++ + + + AK
Sbjct: 179 LKISEEDYSMVFTANRTSAFRLVAESYPFNSKRKLLTVY-DYESEAVSEINRVSEKRGAK 237
Query: 238 VIAAPESWLDLRIKGSQLSQYF---RRKCKHAPKGLFAYPVVVSGPGDGSXXXXXXRYSL 294
V AA SW L++ S+L + + K KG++ +P+ G RY
Sbjct: 238 VAAAEFSWPRLKLCSSKLRKLVTAGKNGSKTKKKGIYVFPLHSRVTGS--------RYPY 289
Query: 295 HWVSEAHRNGWHVLLDATGLAAG--DRLPLSLHRPDFVTCALDDARAQPPSAATATVTCL 352
W+S A NGWHV++DA GL D LS++ PDF+ C+ + PS CL
Sbjct: 290 LWMSVAQENGWHVMIDACGLGPKDMDSFGLSIYNPDFMVCSFYKVFGENPSG----FGCL 345
Query: 353 LVRRRSFDV 361
V++ + +
Sbjct: 346 FVKKSTISI 354
>AT4G37100.1 | chr4:17479173-17481863 REVERSE LENGTH=897
Length = 896
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 95/212 (44%), Gaps = 20/212 (9%)
Query: 150 LARKASFPGSFVSIPEIQARNRVLRRCGLADDDDDYLVLFAPTPRDVLVLVGESYPFFRG 209
L+ A + G+ E + R++ + +++ Y ++F + L+ ESYPF +
Sbjct: 186 LSNHALYGGAESGTVEHDIKTRIMDYLNIPENE--YGLVFTVSRGSAFRLLAESYPF-QS 242
Query: 210 NYYMSILAGGEADGGDCVRAFAAYKDAKVIAAPESWLDLRIKGSQLSQ---YFRRKCKHA 266
N + + E+ + + A K AK A W L++ + L + Y +RK K +
Sbjct: 243 NKRLLTMFDHESQSVNWMAQTAREKGAKAYNAWFKWPTLKLCSTDLKKRLSYKKRKKKDS 302
Query: 267 PKGLFAYPVVVSGPGDGSXXXXXXRYSLHWVSEAHRNGWHVLLDATGLAAG--DRLPLSL 324
GLF +P G +YS W++ A +N WHVLLDA L D L LSL
Sbjct: 303 AVGLFVFPAQSRVTG--------TKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSL 354
Query: 325 HRPDFVTCALDDARAQPPSAATATVTCLLVRR 356
RP+F+ + P+ CLL+++
Sbjct: 355 FRPEFIITSFYRVFGHDPTG----FGCLLIKK 382
>AT2G23520.1 | chr2:10014256-10016943 REVERSE LENGTH=896
Length = 895
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 94/212 (44%), Gaps = 20/212 (9%)
Query: 150 LARKASFPGSFVSIPEIQARNRVLRRCGLADDDDDYLVLFAPTPRDVLVLVGESYPFFRG 209
L+ A + G+ + E + R++ + + + Y ++F + L+ ESYPF
Sbjct: 182 LSNHALYGGAEIGTVEHDLKTRIMDYLNIPESE--YGLVFTGSRGSAFRLLAESYPFHTN 239
Query: 210 NYYMSILAGGEADGGDCVRAFAAYKDAKVIAAPESWLDLRIKGSQLSQ---YFRRKCKHA 266
+++ E+ + + A K AK A W L++ + L + + +RK K +
Sbjct: 240 KRLLTMF-DHESQSVNWMAQTAREKGAKAYNAWFKWPTLKLCSTDLKKRLSHKKRKKKDS 298
Query: 267 PKGLFAYPVVVSGPGDGSXXXXXXRYSLHWVSEAHRNGWHVLLDATGLAAG--DRLPLSL 324
GLF +P G +YS W++ A +N WHVLLDA L D L LSL
Sbjct: 299 AVGLFVFPAQSRVTG--------SKYSYQWMALAQQNNWHVLLDAGSLGPKDMDSLGLSL 350
Query: 325 HRPDFVTCALDDARAQPPSAATATVTCLLVRR 356
RP+F+ + P+ CLL+++
Sbjct: 351 FRPEFIITSFYKVFGHDPTG----FGCLLIKK 378
>AT5G66950.1 | chr5:26733333-26735945 FORWARD LENGTH=871
Length = 870
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 18/180 (10%)
Query: 182 DDDYLVLFAPTPRDVLVLVGESYPFFRGNYYMSILAGGEADGGDCVRAFAAYKDAKVIAA 241
+++Y ++F + L+ ESYPF +++ E+ + A K AKV +A
Sbjct: 210 ENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMF-DHESQSVSWMGQCAKEKGAKVGSA 268
Query: 242 PESWLDLRIKGSQLSQYF---RRKCKHAPKGLFAYPVVVSGPGDGSXXXXXXRYSLHWVS 298
W LR+ L + +++ K + GLF +PV G +YS W++
Sbjct: 269 WFKWPTLRLCSMDLKKEILSKKKRKKDSATGLFVFPVQSRVTG--------SKYSYQWMA 320
Query: 299 EAHRNGWHVLLDATGLAAG--DRLPLSLHRPDFVTCALDDARAQPPSAATATVTCLLVRR 356
A +N WHVLLDA L D L LSL RPDF+ + P+ CLL+++
Sbjct: 321 LAQQNNWHVLLDAGALGPKDMDSLGLSLFRPDFIITSFYRVFGYDPTG----FGCLLIKK 376
>AT4G22980.1 | chr4:12043974-12045653 REVERSE LENGTH=560
Length = 559
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 87/204 (42%), Gaps = 18/204 (8%)
Query: 159 SFVSIPEIQARNRVLRRCGLADDDDDYLVLFAPTPRDVLVLVGESYPFFRGNYYMSILAG 218
SF Q+R R + ++ +Y ++ +V E Y F + N + +
Sbjct: 141 SFEEESRFQSRIRKRITSFMNLEESEYHMILTQDRSSAFKIVAELYSF-KTNPNLLTVYN 199
Query: 219 GEADGGDCVRAFAAYKDAKVIAAPESWLDLRIKGSQLSQYFRRKCKHAPKGLFAYPV--V 276
E + + + + K K +A SW I +L + R + +GLF +P+ +
Sbjct: 200 YEDEAVEEMIRISEKKGIKPQSAEFSWPSTEILSEKLKRRITRSKRRGKRGLFVFPLQSL 259
Query: 277 VSGPGDGSXXXXXXRYSLHWVSEAHRNGWHVLLDATGLAAGD--RLPLSLHRPDFVTCAL 334
V+G YS W+S A + WHVLLD + L + D L LSL +PDF+ C+
Sbjct: 260 VTGAS----------YSYSWMSLARESEWHVLLDTSALGSKDMETLGLSLFQPDFLICSF 309
Query: 335 DDARAQPPSAATATVTCLLVRRRS 358
+ Q + CL V++ S
Sbjct: 310 TEVLGQDDPSGFG---CLFVKKSS 330
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.139 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,906,402
Number of extensions: 323606
Number of successful extensions: 610
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 599
Number of HSP's successfully gapped: 5
Length of query: 368
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 268
Effective length of database: 8,364,969
Effective search space: 2241811692
Effective search space used: 2241811692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)