BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0484000 Os11g0484000|AK065321
         (518 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G53850.2  | chr5:21861155-21864817 REVERSE LENGTH=508          724   0.0  

>AT5G53850.2 | chr5:21861155-21864817 REVERSE LENGTH=508
          Length = 507

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/482 (71%), Positives = 414/482 (85%), Gaps = 6/482 (1%)

Query: 37  CRHFYGQGWVTGTGGSITVKANDPALPLADQLIVMSPSGVQKERMVAEDMYVLSADGKVL 96
           CRHFY QGWV+GTGGSIT+K +D ++P  +QLIVMSPSGVQKERM  EDMY+LSA+G ++
Sbjct: 32  CRHFYTQGWVSGTGGSITMKVHDASIPKPEQLIVMSPSGVQKERMQPEDMYILSANGSII 91

Query: 97  SSPVSKPWPNKPPKCTDCAPLFMKAYLMRGAGAVIHSHGMETCIATMLDPGAKEFRMTHM 156
           S+P  KP+PNKPPKCTDCAPLFMKAY MR AGAVIHSHGME+C+ TML+P AKEFR+THM
Sbjct: 92  STPSPKPYPNKPPKCTDCAPLFMKAYEMRNAGAVIHSHGMESCLVTMLNPQAKEFRITHM 151

Query: 157 EMIKGIKGHGYRDELVVPIIENTPYEYELTDSLAEAIAAYPKATAVLVRNHGIYVWGDSW 216
           EMIKGI+GHGY DELVVPIIENT YE ELTDSL +AI AYPKATAVLVRNHG+Y+WGDSW
Sbjct: 152 EMIKGIQGHGYYDELVVPIIENTAYENELTDSLTKAIEAYPKATAVLVRNHGVYIWGDSW 211

Query: 217 INAKTQAECYHYLFDAAIKLYQLGIDWTTPEHGPINSAKRPRSVLSSSIPNGCPDSKSSK 276
           I+AKTQAECYHYLFDAAIKL+QLG+D  TP+HGPI      R  + S I +   + +  +
Sbjct: 212 IHAKTQAECYHYLFDAAIKLHQLGLDAATPDHGPI------RRTIHSQIKDSQYEREWPR 265

Query: 277 HCVVLDIEGTTTPISFVTDVMFPYARDNVRKHLTSTYSSDETKEDIKLLRIQVEEDLKNG 336
             +VLDIEGTTTPI+FVTDV+FPYAR+NV KHL  TY + ET+EDIKLLR QVEEDL+ G
Sbjct: 266 RWIVLDIEGTTTPITFVTDVLFPYARENVGKHLNLTYHTAETQEDIKLLRAQVEEDLREG 325

Query: 337 IVGSVPIPPDDADKEEVINALVANVESMIKADRKITSLKQLQGHIWRTGFESKELQGVVF 396
           + G+VPIP  D  KE+VI A+V+NVE+MI+ADRKIT+LK+LQGHIWRTGFE  EL+ +VF
Sbjct: 326 VTGAVPIPHADEGKEKVIAAMVSNVEAMIRADRKITALKELQGHIWRTGFECDELKAIVF 385

Query: 397 DDVPEALKHWHASGMKVYIYSSGSREAQRLLFGNTAYGDLRQYLCGFFDTTTGNKRETRS 456
           +DV +AL+ WH+SG+KVYIYSSGSR AQ+LLFGNT YGDLR+Y+ GFFDTT GNK+E+RS
Sbjct: 386 EDVADALEKWHSSGIKVYIYSSGSRLAQKLLFGNTDYGDLRKYISGFFDTTIGNKKESRS 445

Query: 457 YFEISQSLGVDSPAQILFITDVFQEAVAAKSAGFEVIISIRPGNAPLPENHGFRTIKSFS 516
           Y EI ++LGVD PA+I+F+TDV+QEAVAAK+AG E IISIRPGNAPLPENHGF+T+ SFS
Sbjct: 446 YKEIKETLGVDDPAEIMFVTDVYQEAVAAKAAGLEAIISIRPGNAPLPENHGFKTVTSFS 505

Query: 517 EI 518
           +I
Sbjct: 506 QI 507



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,064,832
Number of extensions: 476518
Number of successful extensions: 1157
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1156
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 415
Effective length of database: 8,282,721
Effective search space: 3437329215
Effective search space used: 3437329215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)