BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0434000 Os11g0434000|AK111457
         (221 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G14110.1  | chr2:5952005-5953002 FORWARD LENGTH=191            178   2e-45

>AT2G14110.1 | chr2:5952005-5953002 FORWARD LENGTH=191
          Length = 190

 Score =  178 bits (452), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/149 (57%), Positives = 107/149 (71%), Gaps = 1/149 (0%)

Query: 51  VLPRLVVFDLDHTLWPFQCDRLPKDEPPYLYPQARGILKALKDRGIEMAIASRASRKKGV 110
           +LPRLVVFDLD+TLWPF C+   K E P +YPQA+GIL ALK++GIEMAIASR S    +
Sbjct: 19  ILPRLVVFDLDYTLWPFYCECRSKREMPSMYPQAKGILSALKEKGIEMAIASR-SPTSDI 77

Query: 111 AKAFLEKLGIHFMFGAQEIFYTWSPKNEHFQSIHRKTGVPFKSMLFFDDEARNIIATRKL 170
           A  FL+KL I  MF A+EI+ +WS K EHFQ IH +TGVPF +MLFFDDE RNI +  K+
Sbjct: 78  ANTFLDKLNIKPMFVAKEIYSSWSHKTEHFQKIHTRTGVPFTAMLFFDDEDRNIKSVSKM 137

Query: 171 GVSCVLVDTGITLEKLRTGLSNYANRSAS 199
           GV+ +LV  G+TL   R GL+ +     S
Sbjct: 138 GVTSILVGDGVTLGAFRQGLTEFTQNHNS 166



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,261,177
Number of extensions: 145810
Number of successful extensions: 323
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 126
Effective length of database: 8,502,049
Effective search space: 1071258174
Effective search space used: 1071258174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)