BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0414000 Os11g0414000|AK071277
(412 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G36230.1 | chr5:14273519-14276773 FORWARD LENGTH=412 684 0.0
AT1G65220.1 | chr1:24226204-24228799 FORWARD LENGTH=412 665 0.0
AT4G18300.1 | chr4:10118852-10120981 FORWARD LENGTH=710 58 9e-09
AT2G34970.1 | chr2:14746340-14748532 FORWARD LENGTH=731 55 5e-08
AT3G02270.1 | chr3:448977-451007 REVERSE LENGTH=677 53 3e-07
AT1G36730.1 | chr1:13898706-13900025 REVERSE LENGTH=440 49 3e-06
>AT5G36230.1 | chr5:14273519-14276773 FORWARD LENGTH=412
Length = 411
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/405 (78%), Positives = 368/405 (90%), Gaps = 1/405 (0%)
Query: 1 MSSKEKPTLGGQRIKTRKRNIAAPLDPASFSDAIVQIYLDNAGDLELVAKSIESSDLNFS 60
MSSKEKPTLGG RIKTRKRNIAAPLDPA+FSDA+VQIY DNAGDLELVAKSIESSDLNF+
Sbjct: 1 MSSKEKPTLGGTRIKTRKRNIAAPLDPAAFSDAVVQIYHDNAGDLELVAKSIESSDLNFT 60
Query: 61 RYGDTFFEVVFIGGRTQPGTIKPEEEGERHPYSVLDCAAQREAILPSVLYIQKTLRRRPF 120
RYGD FFEV+FIGGRTQPGT+K +EGERH YSV+DC +REAILPSV+YIQK LRR+PF
Sbjct: 61 RYGDIFFEVIFIGGRTQPGTVK-SDEGERHTYSVIDCEPKREAILPSVVYIQKILRRKPF 119
Query: 121 LIKNLENVMRKFLQSLEFFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVSKG 180
LIKNLENV R+FLQSLE FEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLV+KG
Sbjct: 120 LIKNLENVTRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKG 179
Query: 181 IVLSFITEFFKEYLKENTLDDLIALLKKGKMEDNLLEFFPSAKRTSEALSEHFTKEGLTS 240
IVLSF+T+FFKEYL EN+L+DLI++L++GKMEDNL++F P +R++E+ +EHFT EGLT
Sbjct: 180 IVLSFVTDFFKEYLVENSLEDLISILRRGKMEDNLMDFLPPVRRSAESFAEHFTNEGLTD 239
Query: 241 LVEYNEKKMFEVKLKEIKLTLTTMINEEAEISEVTEAVKQQVKDAKFPDIEVVRMLWDVL 300
LVEY+ KKMFEVKL+EIK LT+ + EE+ + EV E+VKQQ+KDAK PDIEVVR++WD L
Sbjct: 240 LVEYHSKKMFEVKLREIKTVLTSKVTEESNVDEVIESVKQQIKDAKLPDIEVVRVVWDGL 299
Query: 301 MEAVQWSGKNQQQNSNSALRQVKAWAGLLNAFCTSGRLELELIYKVQTQCYEDAKLMKLF 360
M+AVQWSGKNQQQN+NS LRQVK WA LLN FCTSG+LELEL+YKVQ QCYEDAKLMK+F
Sbjct: 300 MDAVQWSGKNQQQNANSVLRQVKTWAPLLNTFCTSGKLELELMYKVQMQCYEDAKLMKVF 359
Query: 361 PEIIRTLYDQDVLAEDTILLWFRKGSNPKGRQSFVKALEPFVKWL 405
PE++R+LY+ DVLAEDTIL WFRKG+N KGRQ+FVK+LEPFV WL
Sbjct: 360 PEVVRSLYELDVLAEDTILHWFRKGTNSKGRQTFVKSLEPFVNWL 404
>AT1G65220.1 | chr1:24226204-24228799 FORWARD LENGTH=412
Length = 411
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/405 (76%), Positives = 360/405 (88%), Gaps = 1/405 (0%)
Query: 1 MSSKEKPTLGGQRIKTRKRNIAAPLDPASFSDAIVQIYLDNAGDLELVAKSIESSDLNFS 60
MSSKEKPTLGG RIKTRKRNIAAPLDPA+FSDA+VQIYLDNAGDLELVA+S+ESSDLNFS
Sbjct: 1 MSSKEKPTLGGTRIKTRKRNIAAPLDPAAFSDALVQIYLDNAGDLELVARSLESSDLNFS 60
Query: 61 RYGDTFFEVVFIGGRTQPGTIKPEEEGERHPYSVLDCAAQREAILPSVLYIQKTLRRRPF 120
RYGD FFEVVFIGGRTQ G++K +EGERHPYS++DC +REAILPSV+YIQK LRR+ F
Sbjct: 61 RYGDIFFEVVFIGGRTQTGSVK-SDEGERHPYSIIDCEPKREAILPSVVYIQKILRRKAF 119
Query: 121 LIKNLENVMRKFLQSLEFFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVSKG 180
LIKNLENV R+FLQSLE FEENERKKLAIFTALAFSQKLSGLP ETVFQPLLKD LV+KG
Sbjct: 120 LIKNLENVTRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPAETVFQPLLKDTLVAKG 179
Query: 181 IVLSFITEFFKEYLKENTLDDLIALLKKGKMEDNLLEFFPSAKRTSEALSEHFTKEGLTS 240
IVL+F+T+FF EYL EN+LDDLI++L++GKM+D LLEF P KRT+E+ +EHFTK GLT+
Sbjct: 180 IVLNFVTDFFNEYLVENSLDDLISILRRGKMDDKLLEFLPPTKRTTESFAEHFTKAGLTA 239
Query: 241 LVEYNEKKMFEVKLKEIKLTLTTMINEEAEISEVTEAVKQQVKDAKFPDIEVVRMLWDVL 300
LVEYNE+K+FEVKLKEIK LT+ + EE + EVTE VKQQVKDAK P+ EVV ++WD +
Sbjct: 240 LVEYNERKIFEVKLKEIKAVLTSQVTEEINVDEVTEMVKQQVKDAKLPETEVVHVIWDGI 299
Query: 301 MEAVQWSGKNQQQNSNSALRQVKAWAGLLNAFCTSGRLELELIYKVQTQCYEDAKLMKLF 360
M AVQWSGKNQQQNSN+ LRQVK WA LLN C++G +E+EL+YKVQ QCYEDAKLMK+F
Sbjct: 300 MNAVQWSGKNQQQNSNAVLRQVKTWAPLLNTLCSTGNMEMELMYKVQMQCYEDAKLMKVF 359
Query: 361 PEIIRTLYDQDVLAEDTILLWFRKGSNPKGRQSFVKALEPFVKWL 405
PE++R+LY+ DVLAEDTIL W+RKG+NPKGRQ+FVK LEPFV WL
Sbjct: 360 PEVVRSLYELDVLAEDTILHWYRKGTNPKGRQTFVKGLEPFVNWL 404
>AT4G18300.1 | chr4:10118852-10120981 FORWARD LENGTH=710
Length = 709
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 317 SALRQVKAWAGLLNAFCTSGRLELELIYKVQTQCYEDAKLMKLFPEIIRTLYDQDVLAED 376
+A+ + W G+L + ++E+I K + C E +L LF +++ LYD+DV+ ED
Sbjct: 609 NAMGVITKWKGVLGFYLKQTDAQIEVIMKFEEMCQESEELSPLFAKLLPFLYDKDVVQED 668
Query: 377 TILLWF-RKGSNPKGRQSFVKALEPFVKWLEEA 408
IL W K + ++ E F+KWL+EA
Sbjct: 669 AILRWGEEKAGADDCDKVYLNKCESFIKWLKEA 701
>AT2G34970.1 | chr2:14746340-14748532 FORWARD LENGTH=731
Length = 730
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 313 QNSNSALRQ-----VKAWAGLLNAFCTSGRLELELIYKVQTQCYEDAK-LMKLFPEIIRT 366
NS S L + + W LL + ++E+I K + C E K L LF +I+
Sbjct: 611 HNSGSELYKNAASIITKWKDLLGFYAKKIDEQIEVIMKFEEMCQESHKELGPLFTQILHL 670
Query: 367 LYDQDVLAEDTILLW-FRKGSNPKGRQSFVKALEPFVKWLEEA 408
LYD+DVL ED IL W K + + ++K + F++WL+EA
Sbjct: 671 LYDKDVLQEDAILRWEEEKAGADEADKVYLKQCDTFIQWLKEA 713
>AT3G02270.1 | chr3:448977-451007 REVERSE LENGTH=677
Length = 676
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 322 VKAWAGLLNAFCTSGRLELELIYKVQTQCYEDA-KLMKLFPEIIRTLYDQ--DVLAEDTI 378
+ W GLL + ++E+I +++ C E A +L LF I+R +Y++ D+L E I
Sbjct: 580 ITRWKGLLGFYVKKSDEQIEVISRLEEMCEESAHELGTLFAHILRYMYEEENDLLQEVAI 639
Query: 379 LLWF-RKGSNPKGRQSFVKALEPFVKWLEEAEEEE 412
L W K + + ++K EPF+ WL+E ++E
Sbjct: 640 LRWSDEKAGADESDKVYLKQCEPFITWLKETSDDE 674
>AT1G36730.1 | chr1:13898706-13900025 REVERSE LENGTH=440
Length = 439
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 8/76 (10%)
Query: 339 ELELIYKVQTQCYE-DAKLMKLFPEIIRTLYDQDVLAEDTILLWFRKG--SNPKGRQSFV 395
++ L+ +++ C + A+ K +I+ LYD+D+L ED I+ W+ KG S+P +
Sbjct: 365 QMGLLNGIESFCMKASAEAAKEVALVIKGLYDEDILDEDVIVEWYNKGVKSSP-----VL 419
Query: 396 KALEPFVKWLEEAEEE 411
K + PF++WL+ AE E
Sbjct: 420 KNVTPFIEWLQNAESE 435
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,571,170
Number of extensions: 351509
Number of successful extensions: 1134
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1130
Number of HSP's successfully gapped: 7
Length of query: 412
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 311
Effective length of database: 8,337,553
Effective search space: 2592978983
Effective search space used: 2592978983
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)