BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0293300 Os11g0293300|AK107624
(366 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G54380.1 | chr1:20298287-20300899 REVERSE LENGTH=516 189 2e-48
AT2G42510.2 | chr2:17701686-17704618 FORWARD LENGTH=654 95 5e-20
>AT1G54380.1 | chr1:20298287-20300899 REVERSE LENGTH=516
Length = 515
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/228 (45%), Positives = 142/228 (62%), Gaps = 12/228 (5%)
Query: 147 ILKPAFAVDGDPDFESGEPLDGFEYLRRVRWEANQIPRVKVAKIDLNT-ARNEQTPYMPE 205
IL+PAF VDG+PDF +G P DG EYLRRVRWEA IP V+VAKID +T + EQ+ YMP
Sbjct: 285 ILRPAFEVDGEPDFSTGPPEDGLEYLRRVRWEAKGIPNVRVAKIDESTYIKKEQSVYMPL 344
Query: 206 IPDIAKCSPDLCASKPWEDTFITYFSETRLAFSELDSS--DGPSVSGGTKNLLKPSNRSE 263
IP+I KC L K WED+ + F R ++ +S D S ++LL
Sbjct: 345 IPEIPKCPEYLLPMKEWEDSLLLDFVHLRQTLTQSANSCEDEIISSQCVEDLLVEMFNKH 404
Query: 264 PQTD------PTLTMIRNMDAVSRAATLRNYIDMIQSLDKLSRNDCLWLFSLCVAVDTPL 317
T+ +T I+ MD+V+R + L+ I +++ L +DC W+ +LC +++TPL
Sbjct: 405 LHTEEDESFGEVVTDIQGMDSVTRVSKLKKRICLVEKESGLQSSDCKWVVALCASLETPL 464
Query: 318 DAETCASLRSLLRKCANVLA-AKLEMDDE--VAMLNILITISGRFFGQ 362
DA+TCA LR LLRKCA+V A LE+ DE + M N+LITI+GR+FGQ
Sbjct: 465 DADTCACLRGLLRKCASVRAETSLEVGDEEVITMANMLITIAGRYFGQ 512
>AT2G42510.2 | chr2:17701686-17704618 FORWARD LENGTH=654
Length = 653
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 102/205 (49%), Gaps = 37/205 (18%)
Query: 147 ILKPAFAVDGDPDFESGEPLDGFEYLRRVRWEANQIPRVKVAKIDLNTAR-NEQTPYMPE 205
IL+PAFAVDG+PDF+SG P DG EYLRRVRWEA +IP VKVAK+ + R EQ+ YMP+
Sbjct: 448 ILRPAFAVDGEPDFDSGPPEDGIEYLRRVRWEAKRIPNVKVAKVSGSKYREKEQSVYMPQ 507
Query: 206 IPDIAKCSPDLCASKPW----EDTFITYFSETRLAFSELDSSDGPSVSGGTKNLLKPSNR 261
IP + + + I +F L+ L D T+N L +
Sbjct: 508 IPRAPATGEGMGGLVAFRLLTHSSGIPFFQLAYLSVFLLTDKD-------TRNGLSDTGI 560
Query: 262 SEPQTDPTLTMIRNMDAVSRAATLRNYIDMIQSLDKLSRNDCLWLFSLCVAVDTPLDAET 321
+ D M ++ ++ + + + S+D TP DA+T
Sbjct: 561 KAEKAD----MFGEKESGLESSDCKWVVALCASVD------------------TPPDADT 598
Query: 322 CASLRSLLRKCANVLAAK---LEMD 343
A LR+L+RKCA++ A + LEM+
Sbjct: 599 SACLRALVRKCASLRALEVGVLEMN 623
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,807,735
Number of extensions: 254088
Number of successful extensions: 562
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 558
Number of HSP's successfully gapped: 3
Length of query: 366
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 266
Effective length of database: 8,364,969
Effective search space: 2225081754
Effective search space used: 2225081754
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)