BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0282300 Os11g0282300|014-044-H11
(126 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G31560.1 | chr2:13436611-13437312 FORWARD LENGTH=203 160 1e-40
AT1G05870.1 | chr1:1772454-1773228 REVERSE LENGTH=190 152 3e-38
AT2G43340.1 | chr2:18007769-18008416 FORWARD LENGTH=190 147 1e-36
AT3G22690.1 | chr3:8021347-8024534 REVERSE LENGTH=939 99 5e-22
AT4G33985.1 | chr4:16288301-16288857 REVERSE LENGTH=155 75 1e-14
AT3G04700.1 | chr3:1276948-1277607 FORWARD LENGTH=192 74 3e-14
AT1G08790.1 | chr1:2811989-2812646 FORWARD LENGTH=191 74 3e-14
AT5G28690.1 | chr5:10723033-10723702 FORWARD LENGTH=193 73 4e-14
AT2G15590.2 | chr2:6801950-6802506 FORWARD LENGTH=156 61 2e-10
AT3G50350.1 | chr3:18672906-18673706 FORWARD LENGTH=182 54 3e-08
AT3G62070.1 | chr3:22983710-22984482 REVERSE LENGTH=229 52 7e-08
AT2G46940.1 | chr2:19286658-19287505 REVERSE LENGTH=253 52 7e-08
AT2G15610.1 | chr2:6806033-6806686 FORWARD LENGTH=154 51 1e-07
>AT2G31560.1 | chr2:13436611-13437312 FORWARD LENGTH=203
Length = 202
Score = 160 bits (405), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/111 (69%), Positives = 85/111 (76%), Gaps = 3/111 (2%)
Query: 19 VGRARSLTDDDLEELKGCVDLGFGFSYDEIPELCGTLPALELCYSMSQRFLD---EHYHX 75
+ RA+SLTDDDLEELKGC+DLGFGFSYDEIPELC TLPALELCYSMSQ+FLD +++H
Sbjct: 92 LTRAKSLTDDDLEELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDKQQNHHK 151
Query: 76 XXXXXXXXXXXXXXXXXXNWKISSPGDSPDEVKARLKYWAQAVACTVRLCS 126
NWKISSPGD PD+VKARLKYWAQ VACTVRLCS
Sbjct: 152 SQEEDDSSPPPTTTAPIANWKISSPGDDPDDVKARLKYWAQTVACTVRLCS 202
>AT1G05870.1 | chr1:1772454-1773228 REVERSE LENGTH=190
Length = 189
Score = 152 bits (385), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 73/112 (65%), Positives = 85/112 (75%), Gaps = 4/112 (3%)
Query: 19 VGRARSLTDDDLEELKGCVDLGFGFSYDEIPELCGTLPALELCYSMSQRFLDEHYHXXXX 78
+ R++SLTDDDLE+L+GC+DLGFGFSYDEIPELC TLPALELCYSMSQ+FLD+ +
Sbjct: 78 LTRSKSLTDDDLEDLRGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDKQNKSPE 137
Query: 79 XXXX----XXXXXXXXXXXNWKISSPGDSPDEVKARLKYWAQAVACTVRLCS 126
NWKISSPGD+PD+VKARLKYWAQAVACTV+LCS
Sbjct: 138 TSSVEDCPSPPLVTATPIANWKISSPGDNPDDVKARLKYWAQAVACTVQLCS 189
>AT2G43340.1 | chr2:18007769-18008416 FORWARD LENGTH=190
Length = 189
Score = 147 bits (371), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/109 (66%), Positives = 84/109 (77%), Gaps = 3/109 (2%)
Query: 21 RARSLTDDDLEELKGCVDLGFGFSYDEIPELCGTLPALELCYSMSQRFLDEHYHXXXXXX 80
R +SLTDDDLEELKGCVDLGFGF+Y+EIPELC TLPALELCYSMSQ+F+D+ +H
Sbjct: 81 RTKSLTDDDLEELKGCVDLGFGFNYEEIPELCNTLPALELCYSMSQKFIDQDHHHHSSSS 140
Query: 81 XXXXXXXX---XXXXXNWKISSPGDSPDEVKARLKYWAQAVACTVRLCS 126
+WKISSPGD+PD+VKARLK+WAQAVACTVRLC+
Sbjct: 141 PEKKSSVLDSPVSPIASWKISSPGDNPDDVKARLKFWAQAVACTVRLCT 189
>AT3G22690.1 | chr3:8021347-8024534 REVERSE LENGTH=939
Length = 938
Score = 99.0 bits (245), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 60/93 (64%), Gaps = 12/93 (12%)
Query: 25 LTDDDLEELKGCVDLGFGFSYDEIPELCGTLPALELCYSMSQRFLDEHYHXXXXXXXXXX 84
LTDDDLE LKGC+DLGFGF+YDEIP LC TLPALELCYSMSQ+ LD+ +
Sbjct: 843 LTDDDLEVLKGCLDLGFGFNYDEIPALCKTLPALELCYSMSQKNLDDKH----------- 891
Query: 85 XXXXXXXXXNWKISSPGDSPDEVKARLKYWAQA 117
+ D+PD+VKARLK WAQA
Sbjct: 892 -TPSLQLPIGRSLVPSCDNPDDVKARLKCWAQA 923
>AT4G33985.1 | chr4:16288301-16288857 REVERSE LENGTH=155
Length = 154
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 19 VGRARSLTDDDLEELKGCVDLGFGF---SYDEIPELCGTLPALELCYSMSQRFLDEHYHX 75
+GR++S+TD+DLEELKGC++LGFGF S D P L TLPAL L ++++++
Sbjct: 43 LGRSKSVTDEDLEELKGCIELGFGFEPDSPDLDPRLSETLPALGLYCAVNKQYSSRLSRT 102
Query: 76 XXXXXXXXXXXXXXXXXXNWKISSPGDSPDEVKARLKYWAQAVACTVRLCS 126
I GD P+ +K RLK WAQ VAC+V+ S
Sbjct: 103 SSLSSIASEGENSNSSTT---IVDQGDDPETMKLRLKQWAQVVACSVKQFS 150
>AT3G04700.1 | chr3:1276948-1277607 FORWARD LENGTH=192
Length = 191
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 8/107 (7%)
Query: 24 SLTDDDLEELKGCVDLGFGFSYDEIPELCGTLPALELCYSMSQRFLDEHYHXXXXXXXXX 83
+LTD+DL ELKG ++LGFGF+ + +LC TLPAL+L ++++++
Sbjct: 81 NLTDEDLNELKGSIELGFGFNEEAGQKLCNTLPALDLYFAVNRQLSPLPSPSSSRSSSAS 140
Query: 84 XX--------XXXXXXXXNWKISSPGDSPDEVKARLKYWAQAVACTV 122
+ KI PGD P ++K RL++WAQAVAC+V
Sbjct: 141 ASTFSYSIPCSPKKTDSDSVKILCPGDDPQQMKQRLRHWAQAVACSV 187
>AT1G08790.1 | chr1:2811989-2812646 FORWARD LENGTH=191
Length = 190
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 10/108 (9%)
Query: 25 LTDDDLEELKGCVDLGFGFSYDEIPELCGTLPALELCYSMSQRF----------LDEHYH 74
LTD+DL ELKG ++LGFGF+ ++ L TLPAL+L ++++++
Sbjct: 78 LTDEDLSELKGSIELGFGFNEEQGQHLTTTLPALDLYFAVTRQISPVSTPGSGGSSSSSR 137
Query: 75 XXXXXXXXXXXXXXXXXXXNWKISSPGDSPDEVKARLKYWAQAVACTV 122
+ K+ SPGD P +VK RL++WAQAVAC+V
Sbjct: 138 PTSLGDRSSSFGSPISDSDSLKVMSPGDDPQQVKTRLRHWAQAVACSV 185
>AT5G28690.1 | chr5:10723033-10723702 FORWARD LENGTH=193
Length = 192
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 10/108 (9%)
Query: 25 LTDDDLEELKGCVDLGFGFSYDEIPELCGTLPALELCYSMSQRFLD----------EHYH 74
LTD+DL ELKG ++LGFGFS + +LC TLPAL+L ++++++ +
Sbjct: 81 LTDEDLRELKGSIELGFGFSEEAGQKLCNTLPALDLYFAVNRQLSPLPSPSSSNGGDGSL 140
Query: 75 XXXXXXXXXXXXXXXXXXXNWKISSPGDSPDEVKARLKYWAQAVACTV 122
+ KI PGD+P +VK RL++WAQAVAC++
Sbjct: 141 SSTSVSSSSIPCSPKTDSDSLKILCPGDNPQQVKQRLRHWAQAVACSL 188
>AT2G15590.2 | chr2:6801950-6802506 FORWARD LENGTH=156
Length = 155
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 19 VGRARSLTDDDLEELKGCVDLGFGF---SYDEIPELCGTLPALELCYSMSQRFLDEHYHX 75
+ R++S+T+DD+EELKGC +LGFGF S D P L T+PAL+L Y R H
Sbjct: 40 LPRSKSVTNDDIEELKGCFELGFGFETESPDLNPRLSHTIPALDL-YCAVHRQYSNHLSR 98
Query: 76 XXXXXXXXXXXXXXXXXXNWKISSPGDSPDEVKARLKYWAQAVACTVRLCS 126
I GD +K +LK WA+ V +VR S
Sbjct: 99 TSSFASDHEVSNSNNITT---IVDKGDDRKTMKQKLKQWAKVVGFSVRHSS 146
>AT3G50350.1 | chr3:18672906-18673706 FORWARD LENGTH=182
Length = 181
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 21 RARSLTDDDLEELKGCVDLGFGFSYDEI--PELCGTLPALELCYSMSQRFLD 70
R +SLTD+DL+ELK +LGFGF E P L TLPALEL +++ + + D
Sbjct: 69 RGKSLTDEDLDELKASFELGFGFGSPENADPRLSNTLPALELYFAVQKSYND 120
>AT3G62070.1 | chr3:22983710-22984482 REVERSE LENGTH=229
Length = 228
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 41/90 (45%), Gaps = 20/90 (22%)
Query: 30 LEELKGCVDLGFGFSYDEIPELCGTLPALELCYSMSQRFLDEHYHXXXXXXXXXXXXXXX 89
L+E+K C DLGF E+P +P + S + D
Sbjct: 150 LQEVKACRDLGFEL---EVP-----VPG-RISVSTTGSNFDTQTSSGGDSPIA------- 193
Query: 90 XXXXNWKISSPGDSPDEVKARLKYWAQAVA 119
W+ISSPGD P EVKARLK WAQAVA
Sbjct: 194 ----TWRISSPGDDPKEVKARLKVWAQAVA 219
>AT2G46940.1 | chr2:19286658-19287505 REVERSE LENGTH=253
Length = 252
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/26 (84%), Positives = 23/26 (88%)
Query: 94 NWKISSPGDSPDEVKARLKYWAQAVA 119
NW+ISSPGD P EVKARLK WAQAVA
Sbjct: 221 NWRISSPGDDPKEVKARLKMWAQAVA 246
>AT2G15610.1 | chr2:6806033-6806686 FORWARD LENGTH=154
Length = 153
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 5/58 (8%)
Query: 19 VGRARS-LTDDDLEELKGCVDLGFGFSYDEI---PELCGTLPALELCYSMSQRFLDEH 72
+ R++S +T+DD+EEL+GC DLGFGF D + P L T+PAL+L YS R H
Sbjct: 41 LHRSKSCVTNDDIEELRGCFDLGFGFEPDSLDFNPSLSKTIPALDL-YSAIHRQYSNH 97
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,568,763
Number of extensions: 86229
Number of successful extensions: 245
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 14
Length of query: 126
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 39
Effective length of database: 8,721,377
Effective search space: 340133703
Effective search space used: 340133703
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 105 (45.1 bits)