BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0275200 Os11g0275200|AK066677
         (266 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23570.1  | chr3:8458052-8459608 REVERSE LENGTH=240            199   1e-51
AT3G23600.1  | chr3:8473833-8475655 FORWARD LENGTH=240            190   7e-49
AT1G35420.2  | chr1:13026320-13027463 FORWARD LENGTH=316           86   3e-17

>AT3G23570.1 | chr3:8458052-8459608 REVERSE LENGTH=240
          Length = 239

 Score =  199 bits (507), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 100/237 (42%), Positives = 138/237 (58%), Gaps = 5/237 (2%)

Query: 33  QCFEHPPDMKAGGGEAGVVVHDLAGYEAYVTGAAHSGRAIVLASDVYGFQAPLLRQIADK 92
           QC E+PPD+    G   V    L   + YV G+ HS  A++L   V+G++ P LR++ADK
Sbjct: 5   QCTENPPDLDPTSGSGHV--EKLGNLDTYVCGSTHSKLAVLLVPHVFGYETPNLRKLADK 62

Query: 93  VGDAGYYVVVPDLFHGDP---ATTTVNFTEWLESHSPVKEAEKAKSIFAFLRNEGKSLVG 149
           V +AG+Y VVPD FHGDP         F  W++ H   K  E++K I   L+N+G + +G
Sbjct: 63  VAEAGFYAVVPDFFHGDPYNPENQDRPFPIWMKDHELEKGFEESKPIVEALKNKGITSIG 122

Query: 150 VGGYCWGGKFAVEVAKTNEVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTVTPPRLVY 209
             G+CWG K AVE+AK   V+A V+ HP  VT DD+KEV  PI +LG + D V+PP LV 
Sbjct: 123 AAGFCWGAKVAVELAKEKLVDATVLLHPARVTVDDIKEVNLPIAVLGAEIDQVSPPELVR 182

Query: 210 QYVHALRQRNDIDFYAKIFPGVSHGFAGRYNTSDPFALETGKQALALMLDWFQKHLK 266
           Q+   L  +  +  + KIFP   HG+  RYN +DP  +E   +A   ML W   +LK
Sbjct: 183 QFEDILASKPQVKSFVKIFPRCKHGWTVRYNENDPSEVEAAMEAHKDMLAWLIDYLK 239



>AT3G23600.1 | chr3:8473833-8475655 FORWARD LENGTH=240
          Length = 239

 Score =  190 bits (482), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 95/237 (40%), Positives = 140/237 (59%), Gaps = 5/237 (2%)

Query: 33  QCFEHPPDMKAGGGEAGVVVHDLAGYEAYVTGAAHSGRAIVLASDVYGFQAPLLRQIADK 92
           QC E+PP +    G   V    L G +AYV+G+A S   ++L SD++GF+AP LR +ADK
Sbjct: 5   QCCENPPTLNPVSGSGHV--EKLGGLDAYVSGSAESKLCVLLISDIFGFEAPNLRALADK 62

Query: 93  VGDAGYYVVVPDLFHGDPATTTVN---FTEWLESHSPVKEAEKAKSIFAFLRNEGKSLVG 149
           V  +G+YVVVPD F GDP   +        W++ H   K  E  K +   ++N+G + +G
Sbjct: 63  VAASGFYVVVPDYFGGDPYNPSNQDRPIPVWIKDHGCDKGFENTKPVLETIKNKGITAIG 122

Query: 150 VGGYCWGGKFAVEVAKTNEVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTVTPPRLVY 209
             G CWG K  VE++K   ++A V+ HP  V  DD+K  K PI ILG + D ++PP L+ 
Sbjct: 123 AAGMCWGAKVVVELSKEELIQAAVLLHPSFVNVDDIKGGKAPIAILGAEIDQMSPPALLK 182

Query: 210 QYVHALRQRNDIDFYAKIFPGVSHGFAGRYNTSDPFALETGKQALALMLDWFQKHLK 266
           Q+   L  + +++ Y KI P VSHG+  RYN  +P A++  ++A   MLDWF  ++K
Sbjct: 183 QFEEILSSKPEVNSYVKIHPKVSHGWTVRYNIDEPEAVKAAEEAHKEMLDWFVTYIK 239



>AT1G35420.2 | chr1:13026320-13027463 FORWARD LENGTH=316
          Length = 315

 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 19/222 (8%)

Query: 57  GYEAYVTGAA--HSGRAIVLASDVYGFQAPLLRQIADKVGDAGYYVVVPDLFHGDPATTT 114
           G E Y+  A   ++G  ++L SDV+GFQ    R  A +V   GY V+VPDLF GDP +  
Sbjct: 99  GVEGYLLTAVKNNNGTGLLLLSDVFGFQDSATRDFAYRVACNGYNVLVPDLFRGDPWSKN 158

Query: 115 ---VNFTEWLESHSPVKEAEKAKSIFAFLRNEGKSL-----VGVGGYCWGGKFAVEVAKT 166
                + EW   H P +  +   +   ++  E  +      +GV G+C+GG   V+V  T
Sbjct: 159 RPKSEYEEWRRGHDPNRIRQDTTTFTKWMVEEFAAAGISKKLGVMGFCFGGGRVVDVLAT 218

Query: 167 NEVEAVVISHPYAVTADDMK---EVKWPIEILGGQNDTVTPPRLVYQYVHALRQRNDIDF 223
           +E         +  T  D     +VK P+  + G  D +   + +Y+    + + + +  
Sbjct: 219 DESGYFSTGVSFYGTRIDSAVAGDVKVPVLFIAGDRDPLCEVKGLYEIEEKIGEGSKV-- 276

Query: 224 YAKIFPGVSHGFAGRYNTSDPFALETGKQALALMLDWFQKHL 265
              ++ G  HGF  R  T  P      ++A ALM +W   HL
Sbjct: 277 --VVYEGRGHGFVHRPET--PEDDRDAEEAFALMRNWLHHHL 314



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,734,653
Number of extensions: 236643
Number of successful extensions: 578
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 574
Number of HSP's successfully gapped: 3
Length of query: 266
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 169
Effective length of database: 8,447,217
Effective search space: 1427579673
Effective search space used: 1427579673
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)