BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0267000 Os11g0267000|AK061014
         (273 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59400.1  | chr3:21948881-21949678 REVERSE LENGTH=266          213   9e-56

>AT3G59400.1 | chr3:21948881-21949678 REVERSE LENGTH=266
          Length = 265

 Score =  213 bits (542), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 107/197 (54%), Positives = 137/197 (69%), Gaps = 19/197 (9%)

Query: 84  LELLGAQLAERDYRQADETTRALLIELAGEPARRRGYVFFSEVQFISADDLRAIDALWQE 143
            ++L   L  +++RQADE TR LLI+++GE A +RGYVFFSEV+ IS +DL+AID LW +
Sbjct: 81  FDVLENHLVNQNFRQADEETRRLLIQISGEAAVKRGYVFFSEVKTISPEDLQAIDNLWIK 140

Query: 144 HSGGRFGYSVQRRLWEKSRRDFTRFFIRVGWMKKLDTEVEQFNYRAFPDEFIWELNDDTP 203
           HS GRFGYSVQR++W K ++DFTRFF++V WMK LDTEV Q+NYRAFPDEF WELND+TP
Sbjct: 141 HSDGRFGYSVQRKIWLKVKKDFTRFFVKVEWMKLLDTEVVQYNYRAFPDEFKWELNDETP 200

Query: 204 EGHLPLTNALRGTQLLGNIFTHPXXXXXXXXXXXXXXNDTPDNTGQSKDG-----SKGKE 258
            GHLPLTNALRGTQLL  + +HP                  DN+G+++D      +  KE
Sbjct: 201 LGHLPLTNALRGTQLLKCVLSHPAFAT------------ADDNSGETEDELNRGVAVAKE 248

Query: 259 RPKFMRD--FFKPDYSF 273
           +     D   FK +YSF
Sbjct: 249 QAGVGADKRVFKTNYSF 265



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,689,782
Number of extensions: 165276
Number of successful extensions: 319
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 176
Effective length of database: 8,447,217
Effective search space: 1486710192
Effective search space used: 1486710192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)