BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0261900 Os11g0261900|AK107273
         (419 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G18480.1  | chr1:6361639-6362814 FORWARD LENGTH=392            323   2e-88
AT1G07010.3  | chr1:2152949-2154968 FORWARD LENGTH=401            143   2e-34

>AT1G18480.1 | chr1:6361639-6362814 FORWARD LENGTH=392
          Length = 391

 Score =  323 bits (827), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 164/314 (52%), Positives = 210/314 (66%), Gaps = 11/314 (3%)

Query: 59  RLVAIGDLHGDLPKSLSALRLAGLVPPHDPTSWSAGPTLAVQLGDILDRGGDEXXXXXXX 118
           RLVAIGDLHGDL KS  A ++AGL+   D   W+ G T+ VQ+GD+LDRGG+E       
Sbjct: 55  RLVAIGDLHGDLEKSREAFKIAGLIDSSD--RWTGGSTMVVQVGDVLDRGGEELKILYFL 112

Query: 119 XXXXXXXXGQGGALLPIMGNHEVMNVSGDFRFATPQGLREFSAWAGWYRAGLAIKRRCAR 178
                     GG +L + GNHE+MN+ GDFR+ T +GL EF  WA WY  G  +K  C+ 
Sbjct: 113 EKLKREAERAGGKILTMNGNHEIMNIEGDFRYVTKKGLEEFQIWADWYCLGNKMKTLCS- 171

Query: 179 XXXXXXXXXKNPFLGIPKEFPGVKPEFWDGIRSRLAALLPDGPIARRFLADLPTVLVVGD 238
                    K+P+ GIP  FP ++ + ++GIR+R+AAL PDGPIA+RFL    TV VVGD
Sbjct: 172 ----GLDKPKDPYEGIPMSFPRMRADCFEGIRARIAALRPDGPIAKRFLTKNQTVAVVGD 227

Query: 239 SVFVHGGLLEANVEYGLERINAEVSEWIRGERGANAVAPEFVRGRDAVVWLRRFSDGV-- 296
           SVFVHGGLL  ++EYGLERIN EV  WI G +G    AP + RG ++VVWLR+FS+ +  
Sbjct: 228 SVFVHGGLLAEHIEYGLERINEEVRGWINGFKGGR-YAPAYCRGGNSVVWLRKFSEEMAH 286

Query: 297 NCDCQRLEGVLGMIPGAKRMIMGHTIQTEGINAVCGAQAVRVDVGLSRGCGNGLPEVLEI 356
            CDC  LE  L  IPG KRMIMGHTIQ  GIN VC  +A+R+DVG+S+GC +GLPEVLEI
Sbjct: 287 KCDCAALEHALSTIPGVKRMIMGHTIQDAGINGVCNDKAIRIDVGMSKGCADGLPEVLEI 346

Query: 357 NGGGTNVRVITTDP 370
               + VR++T++P
Sbjct: 347 R-RDSGVRIVTSNP 359



>AT1G07010.3 | chr1:2152949-2154968 FORWARD LENGTH=401
          Length = 400

 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/331 (32%), Positives = 154/331 (46%), Gaps = 34/331 (10%)

Query: 61  VAIGDLHGDLPKSLSALRLAGLVPPHDPTSWS--AGPTLAVQLGDILDRGGDEXXXXXXX 118
           + +GDLHGDL K+  AL+LAG++       W         +++GDILDRG DE       
Sbjct: 69  LTVGDLHGDLGKARDALQLAGVLSSDGRDQWYLLEFNITHLEVGDILDRGDDEIAILSLL 128

Query: 119 XXXXXXXXGQGGALLPIMGNHEVMNVSGDFRFATPQGLREFSAWAGWYRAGLAIKRRCAR 178
                     GGA+  + GNHE MNV GDFR+   +   E + +  +         +  R
Sbjct: 129 RSLDDQAKANGGAVFQVNGNHETMNVEGDFRYVDARAFDECTDFLDYLEDYAQDWDKAFR 188

Query: 179 XXXXXXXXXKNPFLGIPKEFPGVKPEFWD---------GIRSRLAALLPDGPIARRFLAD 229
                    K        E       +WD         G+ +R   L P G +A   L+ 
Sbjct: 189 NWIFESRQWK--------EDRRSSQTYWDQWNVVKRQKGVIARSVLLRPGGRLACE-LSR 239

Query: 230 LPTVLVVGDSVFVHGGLLEANVEYGLERINAEVSEWIRGERGANAVAPEF----VRGRDA 285
              +L V + +F HGGLL  +V YG+ERIN EVS W+R        +P+      RG D+
Sbjct: 240 HGVILRVNNWLFCHGGLLPHHVAYGIERINREVSTWMRSPTNYED-SPQMPFIATRGYDS 298

Query: 286 VVWLRRFS-DGVNCDCQRLEGVLGMIP------GAKRMIMGHTIQTEGINAVCGAQAVRV 338
           VVW R +S +    +  ++E V  ++       GAK M++GHT Q  G+N   G    RV
Sbjct: 299 VVWSRLYSRETSELEDYQIEQVNKILHDTLEAVGAKAMVVGHTPQLSGVNCEYGCGIWRV 358

Query: 339 DVGLSRGCGNGLPEVLEINGGGTNVRVITTD 369
           DVG+S G  +  PEVLEI   G   RVI ++
Sbjct: 359 DVGMSSGVLDSRPEVLEIR--GDKARVIRSN 387



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.139    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,500,617
Number of extensions: 281040
Number of successful extensions: 503
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 495
Number of HSP's successfully gapped: 3
Length of query: 419
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 318
Effective length of database: 8,337,553
Effective search space: 2651341854
Effective search space used: 2651341854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)