BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0245500 Os11g0245500|AK063483
         (270 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G49800.1  | chr5:20234771-20236135 REVERSE LENGTH=243          214   5e-56

>AT5G49800.1 | chr5:20234771-20236135 REVERSE LENGTH=243
          Length = 242

 Score =  214 bits (544), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 116/238 (48%), Positives = 156/238 (65%), Gaps = 15/238 (6%)

Query: 24  EDSLKRYVSYASESCIQELLAAXXXXXXXXXXXXXWKVLAY-CNGVEISKRRAGAAHVFR 82
           E+SL+RYV +ASESCIQELL++             WK++ +  NGVEISKR +G+ H FR
Sbjct: 15  EESLRRYVRFASESCIQELLSSSEAGRFGNASNG-WKMVRHDSNGVEISKRDSGSLHAFR 73

Query: 83  SRWLLHAVSPGKFMAVANAVDAAKQWESDLVDARYIRELGDDLSIVHLKLGADASKRTAG 142
           SR +L +VSP +F+ VANA+DAAKQWE DLV+A +IR++ ++LS++ L+ G ++      
Sbjct: 74  SRRILTSVSPEQFITVANAIDAAKQWEGDLVEATHIRDIDENLSVIRLRFGENSKP---- 129

Query: 143 LFRRRDVVVYERRQTMDDGTLVVAVASLPKEIXXXXXXXXXXXXXXXXXXXXXXXWVVEK 202
           LFR R+ ++YERR+TM DGTLVVAVASLPKE+                       WV+EK
Sbjct: 130 LFRNREFIIYERRETMQDGTLVVAVASLPKEMAEGLEPTEKKKNNYIRGFLVESGWVLEK 189

Query: 203 LDAXXXXXXXXXXXXTYVVQLDPAAGWLPRCFVSRLNSKLVIMIVAKLKKMALATMHS 260
           L+             TYVVQLDP AGWLP+CFV+RLN+KLV MI+  L+K+A A + S
Sbjct: 190 LE-------DTSCMITYVVQLDP-AGWLPKCFVNRLNTKLV-MIIDNLRKVAQAYLPS 238



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,782,650
Number of extensions: 113675
Number of successful extensions: 192
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 173
Effective length of database: 8,447,217
Effective search space: 1461368541
Effective search space used: 1461368541
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 111 (47.4 bits)