BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0245100 Os11g0245100|J065182P11
(104 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G02380.1 | chr2:626878-628569 FORWARD LENGTH=224 106 2e-24
AT2G02390.3 | chr2:629015-630955 FORWARD LENGTH=229 99 4e-22
AT3G62760.1 | chr3:23217425-23218246 REVERSE LENGTH=220 50 3e-07
AT2G29490.1 | chr2:12631593-12632360 REVERSE LENGTH=225 46 3e-06
>AT2G02380.1 | chr2:626878-628569 FORWARD LENGTH=224
Length = 223
Score = 106 bits (265), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 63/74 (85%), Gaps = 1/74 (1%)
Query: 23 ERRLKLYSFWRSSCSYRVRIALSLKGLDYEYKPINLLANEQSHPEFEKLNPMKYVPALVD 82
+ +LKLYS+WRSSC++RVRIAL+LKGLDYEY P+NLL +QS +F+K+NPM VPALVD
Sbjct: 9 QAKLKLYSYWRSSCAHRVRIALTLKGLDYEYIPVNLLKGDQSDSDFKKINPMGTVPALVD 68
Query: 83 GDDTVVVDSFAILL 96
G D V+ DSFAI++
Sbjct: 69 G-DVVINDSFAIIM 81
>AT2G02390.3 | chr2:629015-630955 FORWARD LENGTH=229
Length = 228
Score = 99.0 bits (245), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 64/85 (75%), Gaps = 8/85 (9%)
Query: 19 AAAPERRLKLYSFWRSSCSYRVRIALSLKGLDYEYKPINLLANEQ-------SHPEFEKL 71
A + E +LKLYS+WRSSC++RVRIAL+LKGLDYEY P+NLL +Q +F+K+
Sbjct: 2 ANSGEEKLKLYSYWRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSVYRFDLQDFKKI 61
Query: 72 NPMKYVPALVDGDDTVVVDSFAILL 96
NPM VPALVDG D V+ DSFAI++
Sbjct: 62 NPMGTVPALVDG-DVVINDSFAIIM 85
>AT3G62760.1 | chr3:23217425-23218246 REVERSE LENGTH=220
Length = 219
Score = 49.7 bits (117), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 26 LKLYSFWRSSCSYRVRIALSLKGLDYEYKPINLLANEQSHPEFEKLNPMKYVPALVDGDD 85
+KLY S+C RV + L K ++E P+NL A P F +NP VPAL D DD
Sbjct: 3 MKLYGDEMSACVARVLLCLHEKNTEFELVPVNLFACHHKLPSFLSMNPFGKVPALQD-DD 61
Query: 86 TVVVDSFAI 94
+ +S AI
Sbjct: 62 LTLFESRAI 70
>AT2G29490.1 | chr2:12631593-12632360 REVERSE LENGTH=225
Length = 224
Score = 46.2 bits (108), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 20 AAPERRLKLYSFWRSSCSYRVRIALSLKGLDYEYKPINLLANEQSHPEFEKLNPM-KYVP 78
A E +KL FW S S RV +AL LKG+ YEY +L P +LNP+ K VP
Sbjct: 2 AEKEESVKLLGFWASPFSRRVEMALKLKGVPYEYLEEDL---PNKTPLLLELNPLHKKVP 58
Query: 79 ALVDGDDTVVVDSFAIL 95
LV +D ++++S IL
Sbjct: 59 VLVH-NDKILLESHLIL 74
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,261,963
Number of extensions: 80444
Number of successful extensions: 219
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 5
Length of query: 104
Length of database: 11,106,569
Length adjustment: 74
Effective length of query: 30
Effective length of database: 9,077,785
Effective search space: 272333550
Effective search space used: 272333550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)