BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0245100 Os11g0245100|J065182P11
         (104 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G02380.1  | chr2:626878-628569 FORWARD LENGTH=224              106   2e-24
AT2G02390.3  | chr2:629015-630955 FORWARD LENGTH=229               99   4e-22
AT3G62760.1  | chr3:23217425-23218246 REVERSE LENGTH=220           50   3e-07
AT2G29490.1  | chr2:12631593-12632360 REVERSE LENGTH=225           46   3e-06
>AT2G02380.1 | chr2:626878-628569 FORWARD LENGTH=224
          Length = 223

 Score =  106 bits (265), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 63/74 (85%), Gaps = 1/74 (1%)

Query: 23 ERRLKLYSFWRSSCSYRVRIALSLKGLDYEYKPINLLANEQSHPEFEKLNPMKYVPALVD 82
          + +LKLYS+WRSSC++RVRIAL+LKGLDYEY P+NLL  +QS  +F+K+NPM  VPALVD
Sbjct: 9  QAKLKLYSYWRSSCAHRVRIALTLKGLDYEYIPVNLLKGDQSDSDFKKINPMGTVPALVD 68

Query: 83 GDDTVVVDSFAILL 96
          G D V+ DSFAI++
Sbjct: 69 G-DVVINDSFAIIM 81
>AT2G02390.3 | chr2:629015-630955 FORWARD LENGTH=229
          Length = 228

 Score = 99.0 bits (245), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 64/85 (75%), Gaps = 8/85 (9%)

Query: 19 AAAPERRLKLYSFWRSSCSYRVRIALSLKGLDYEYKPINLLANEQ-------SHPEFEKL 71
          A + E +LKLYS+WRSSC++RVRIAL+LKGLDYEY P+NLL  +Q          +F+K+
Sbjct: 2  ANSGEEKLKLYSYWRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSVYRFDLQDFKKI 61

Query: 72 NPMKYVPALVDGDDTVVVDSFAILL 96
          NPM  VPALVDG D V+ DSFAI++
Sbjct: 62 NPMGTVPALVDG-DVVINDSFAIIM 85
>AT3G62760.1 | chr3:23217425-23218246 REVERSE LENGTH=220
          Length = 219

 Score = 49.7 bits (117), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 26 LKLYSFWRSSCSYRVRIALSLKGLDYEYKPINLLANEQSHPEFEKLNPMKYVPALVDGDD 85
          +KLY    S+C  RV + L  K  ++E  P+NL A     P F  +NP   VPAL D DD
Sbjct: 3  MKLYGDEMSACVARVLLCLHEKNTEFELVPVNLFACHHKLPSFLSMNPFGKVPALQD-DD 61

Query: 86 TVVVDSFAI 94
            + +S AI
Sbjct: 62 LTLFESRAI 70
>AT2G29490.1 | chr2:12631593-12632360 REVERSE LENGTH=225
          Length = 224

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 5/77 (6%)

Query: 20 AAPERRLKLYSFWRSSCSYRVRIALSLKGLDYEYKPINLLANEQSHPEFEKLNPM-KYVP 78
          A  E  +KL  FW S  S RV +AL LKG+ YEY   +L       P   +LNP+ K VP
Sbjct: 2  AEKEESVKLLGFWASPFSRRVEMALKLKGVPYEYLEEDL---PNKTPLLLELNPLHKKVP 58

Query: 79 ALVDGDDTVVVDSFAIL 95
           LV  +D ++++S  IL
Sbjct: 59 VLVH-NDKILLESHLIL 74
  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,261,963
Number of extensions: 80444
Number of successful extensions: 219
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 5
Length of query: 104
Length of database: 11,106,569
Length adjustment: 74
Effective length of query: 30
Effective length of database: 9,077,785
Effective search space: 272333550
Effective search space used: 272333550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)