BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0242600 Os11g0242600|Os11g0242600
(316 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G09990.1 | chr4:6259110-6260064 REVERSE LENGTH=291 112 3e-25
AT1G33800.1 | chr1:12261480-12262456 FORWARD LENGTH=298 107 6e-24
AT1G09610.1 | chr1:3111789-3112637 FORWARD LENGTH=283 103 1e-22
AT1G71690.1 | chr1:26947806-26949064 FORWARD LENGTH=296 99 3e-21
AT1G27930.1 | chr1:9731510-9732379 REVERSE LENGTH=290 56 2e-08
AT1G67330.1 | chr1:25214118-25214993 FORWARD LENGTH=292 56 3e-08
AT4G24910.1 | chr4:12817954-12818901 REVERSE LENGTH=316 52 3e-07
>AT4G09990.1 | chr4:6259110-6260064 REVERSE LENGTH=291
Length = 290
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 93/236 (39%), Gaps = 16/236 (6%)
Query: 83 PAGVAEALVHYATSNATAWGRGXXXXXXXXXXXXXXXXXXXPCNLLVFXXXXXXXXXXXX 142
P +++ALVHY TS T PCN LVF
Sbjct: 62 PTSLSDALVHYVTSEITP-----QQTFDEVSVSKRVLDKKSPCNFLVFGLGHDSLMWASL 116
Query: 143 XXXXRTVFLEEDDALVSGASPASLAIXXXXXXXXXXXXXXXXXXXXXXXXHCTGAAATQL 202
RT+FLEED+A + + + C + +
Sbjct: 117 NHGGRTLFLEEDEAWIETVTKKFPNLESYHVVYDTKVKDSNKLMELKRTEDCKAVSDPR- 175
Query: 203 SPGHFDRSPCKLAVRGLPAAFYEAEWDVIVVDAHAXXXXXXXAMMGAIYTXXXXXXXXXX 262
S C L+++G PA YE +WDVI+VDA M AIYT
Sbjct: 176 ------DSKCALSLKGFPADVYETQWDVIMVDAPTGYHDEAPGRMSAIYTAGLLARNRYD 229
Query: 263 XXETETXXXXXXXXKPVQDRFSTAFLCGGYLKEGVGNLRRFAIPSHKE--GMPFCP 316
ET+ +PV+D FS AFLCGGY+KE G LR F IPSH+ G PFCP
Sbjct: 230 GGETDVFVHDIN--RPVEDEFSVAFLCGGYMKEQQGRLRHFNIPSHRASFGTPFCP 283
>AT1G33800.1 | chr1:12261480-12262456 FORWARD LENGTH=298
Length = 297
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 92/236 (38%), Gaps = 17/236 (7%)
Query: 83 PAGVAEALVHYATSNATAWGRGXXXXXXXXXXXXXXXXXXXPCNLLVFXXXXXXXXXXXX 142
P +++ALVHY TSN T PCN LVF
Sbjct: 70 PLSLSDALVHYVTSNVTP-----QQTFDEVSVSKRVLDKKSPCNFLVFGLGHDSLMWASL 124
Query: 143 XXXXRTVFLEEDDALVSGASPASLAIXXXXXXXXXXXXXXXXXXXXXXXXHCTGAAATQL 202
RT+F+EED A ++ + + C + +
Sbjct: 125 NHGGRTLFIEEDQAWIAIVTKKFPNLESYHVVYDTKVKDSDKLMELGRSEECRSVSDPR- 183
Query: 203 SPGHFDRSPCKLAVRGLPAAFYEAEWDVIVVDAHAXXXXXXXAMMGAIYTXXXXXXXXXX 262
S C LA++ PA FYE +WD+I+VDA M AIYT
Sbjct: 184 ------NSKCDLALKDFPADFYETKWDLIMVDAPTGYHEEAPGRMSAIYTAGLLARNRE- 236
Query: 263 XXETETXXXXXXXXKPVQDRFSTAFLCGGYLKEGVGNLRRFAIPSH--KEGMPFCP 316
+ ET +PV+D FS FLC GY++E G LR F IPSH + G PFCP
Sbjct: 237 --DGETDVFVHDVNRPVEDEFSATFLCKGYMREQNGRLRHFTIPSHRARAGRPFCP 290
>AT1G09610.1 | chr1:3111789-3112637 FORWARD LENGTH=283
Length = 282
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 94/240 (39%), Gaps = 20/240 (8%)
Query: 83 PAGVAEALVHYATSNATAWGRGXXXXXXXXXXXXXXXXXXXPCNLLVFXXXXXXXXXXXX 142
P +A+AL+HY+TS T PCN LVF
Sbjct: 57 PRSLAQALIHYSTSVITP-----QQTLKEIAVSSRVLGKKSPCNFLVFGLGHDSLMWSSL 111
Query: 143 XXXXRTVFLEEDDALVSGASPASLAIXXXXXXXXXXXXXXXXXXXXXXXXHCTGAAATQL 202
RTVFLEED+A + + CT
Sbjct: 112 NYGGRTVFLEEDEAWIKQIKRRFPMLESYHVTYDSKVNQADNLIEVGKGPECTAI----- 166
Query: 203 SPGHFDRSPCKLAVRGLPAAFYEAEWDVIVVDAHAXXXXXXXAMMGAIYTXXXXXXXXXX 262
G S C+LA++GLPA YE WD+I+VDA M AIYT
Sbjct: 167 --GDPRYSMCQLALKGLPAEIYETGWDLIMVDAPTGYYDEAPGRMTAIYTAGMMARNRKQ 224
Query: 263 XXETETXXXXXXXXKPVQDRFSTAFLCGGYLKEGVGNLRRFAIPSHKEG------MPFCP 316
ET+ + ++D+FS AFLC GY+K+ G LR F IPS+++G PFCP
Sbjct: 225 GGETDVFVHDVN--REIEDKFSKAFLCEGYMKKQEGRLRHFIIPSYRDGSESESNRPFCP 282
>AT1G71690.1 | chr1:26947806-26949064 FORWARD LENGTH=296
Length = 295
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 92/238 (38%), Gaps = 15/238 (6%)
Query: 83 PAGVAEALVHYATSNATAWGRGXXXXXXXXXXXXXXXXXXXPCNLLVFXXXXXXXXXXXX 142
P +A+ALVHYA+SN T PCN LVF
Sbjct: 69 PPSLADALVHYASSNVTP-----QQTLSEISVTKKELEKKSPCNFLVFGLGHDSLMWATL 123
Query: 143 XXXXRTVFLEEDDALVSGASPASLAIXXXXXXXXXXXXXXXXXXXXXXXXHCTGAAATQL 202
RT+FL+ED++ + + ++ +T L
Sbjct: 124 NHGGRTIFLDEDESWIHQIAEKFPSLESYHVRYKTKVRDAEALMAATKDREECRRVSTDL 183
Query: 203 SPGHFDRSPCKLAVRGLPAAFYEAEWDVIVVDAHAXXXXXXXAMMGAIYTXXXXXXXXXX 262
S C+LA++GLP YE EWD+I+VDA M AIYT
Sbjct: 184 RV-----STCELALKGLPEVVYETEWDLIMVDAPTGFHEEAPGRMSAIYTAGMIARRRKD 238
Query: 263 XXETETXXXXXXXXKPVQDRFSTAFLCGGYLKEGVGNLRRFAIPSHKE----GMPFCP 316
ET T + V+D FS FLC Y+ + G LR F +PSH+ G+ FCP
Sbjct: 239 EEET-TAVFVHDVDRKVEDEFSMEFLCRDYMTKQEGRLRHFTVPSHRNYGVSGVKFCP 295
>AT1G27930.1 | chr1:9731510-9732379 REVERSE LENGTH=290
Length = 289
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 70/219 (31%), Gaps = 11/219 (5%)
Query: 88 EALVHYATSNATAWGRGXXXXXXXXXXXXXXXXXXXPCNLLVFXXXXXXXXXXXXXXXXR 147
+A+VHYATSN P N LVF +
Sbjct: 66 QAIVHYATSNVVP-----QQNLAEISISFNILKKLAPANFLVFGLGRDSLMWASLNPRGK 120
Query: 148 TVFLEEDDALVSGASPASLAIXXXXXXXXXXXXXXXXXXXXXXXXHCTGAAATQLSPGHF 207
T+FLEED + S + A + L
Sbjct: 121 TLFLEEDLEWFQKVTKDSPFLRAHHVRYRTQLQQADSLLRSYKTEPKCFPAKSYLRGNE- 179
Query: 208 DRSPCKLAVRGLPAAFYEAEWDVIVVDAHAXXXXXXXAMMGAIYTXXXXXXXXXXXXETE 267
CKLA+ GLP FY+ EWD+++VDA M AI++ T
Sbjct: 180 ---KCKLALTGLPDEFYDTEWDLLMVDAPKGYFAEAPGRMAAIFSAAVMARNRKKPGVTH 236
Query: 268 TXXXXXXXXKPVQDRFSTAFLCGGYLKEGVGNLRRFAIP 306
+ V+ F+ FLC Y G L FAIP
Sbjct: 237 V--FLHDVNRRVEKTFAEEFLCRKYRVNAAGRLWHFAIP 273
>AT1G67330.1 | chr1:25214118-25214993 FORWARD LENGTH=292
Length = 291
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 75/221 (33%), Gaps = 12/221 (5%)
Query: 88 EALVHYATSNATAWGRGXXXXXXXXXXXXXXXXXXXPCNLLVFXXXXXXXXXXXXXXXXR 147
+++VHYATS+ PCN LVF
Sbjct: 69 QSIVHYATSHTVP-----QQSFEEISISLNVLKERLPCNFLVFGLGRDSLMWASLNPGGT 123
Query: 148 TVFLEEDDALVSGASPASLAIXXXXXXXXXXXXXXXXXXXXXXXX-HCTGAAATQLSPGH 206
TVFLEED + + ++ C A A P
Sbjct: 124 TVFLEEDPEWIEAVLKDAPSLRAHHVQYRTHLSEAGRLLSTYKNEPMCLPAKAF---PIR 180
Query: 207 FDRSPCKLAVRGLPAAFYEAEWDVIVVDAHAXXXXXXXAMMGAIYTXXXXXXXXXXXXET 266
++ C LA+ LP FY+ EWD+I+VDA M AI++ +
Sbjct: 181 YNEK-CPLALTSLPDEFYDTEWDLIMVDAPKGYFPEAPGRMAAIFS--SAIMARNRKGDG 237
Query: 267 ETXXXXXXXXKPVQDRFSTAFLCGGYLKEGVGNLRRFAIPS 307
T + V++ F+ FLC Y VG L F IP+
Sbjct: 238 TTHVFLHDVNRKVENAFANEFLCEKYKVNSVGRLWHFEIPN 278
>AT4G24910.1 | chr4:12817954-12818901 REVERSE LENGTH=316
Length = 315
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 63/196 (32%), Gaps = 10/196 (5%)
Query: 124 PCNLLVFXXXXXXXXXXXXXXXXRTVFLEEDDALV----SGASPASLAIXXXXXXXXXXX 179
PCN+LVF TV LE++ A + + +P + I
Sbjct: 118 PCNILVFGFAPQYLMLSSINTRGITVILEDEPAKIMIPKAEVNPNNTRIYSLKYHQMEVR 177
Query: 180 XXXXXXXXXXXXXHCTGAAATQLSPGHFDRSPCKLAVRGLPAAFYEAEWDVIVVDAHAXX 239
C A ++ H S CKL +R LP + +WDVIVVD
Sbjct: 178 NAYNLLQHARANPAC----APNMNNQHQGSSDCKLELRDLPQQVHNTKWDVIVVDGPRGD 233
Query: 240 XXXXXAMMGAIYTXXXXXXXXXXXXETETXXXXXXXXKPVQDRFSTAFLCGGYLKEGVGN 299
MG+IYT T+ + + S FLC L G
Sbjct: 234 DLETPGRMGSIYTAAVLARKGSSNSTTDV--FVHDVHRTAEKWLSWEFLCQENLVSAKGT 291
Query: 300 LRRFAIPSHKEGMPFC 315
+F I FC
Sbjct: 292 FWKFRIKRQSNASRFC 307
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.132 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,326,937
Number of extensions: 66409
Number of successful extensions: 91
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 7
Length of query: 316
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 217
Effective length of database: 8,392,385
Effective search space: 1821147545
Effective search space used: 1821147545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)