BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0242400 Os11g0242400|AK067025
         (277 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G71500.1  | chr1:26936084-26937331 FORWARD LENGTH=288          296   8e-81

>AT1G71500.1 | chr1:26936084-26937331 FORWARD LENGTH=288
          Length = 287

 Score =  296 bits (758), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 147/207 (71%), Positives = 173/207 (83%)

Query: 69  NWVPVVPLAALPRGERRVIVQDGEEILLLWYKEQVYAVENRSPAEGAYTEGLLNAKLTQD 128
           NWVPVVPL+ALP+GERRV++QD E ILLLWYK  V+A+ENRSPAEGAY+EGLLNA+LTQD
Sbjct: 80  NWVPVVPLSALPKGERRVVIQDDETILLLWYKNDVFAIENRSPAEGAYSEGLLNARLTQD 139

Query: 129 GCIVCPTTDSTFDLRTGEIKEWYPNNPVLRALTPALRKLFVYPVKIDGENIYISIKGAVT 188
           GCIVCP+TDSTFDLRTGEI+EWYP NPVLR LTPALRKLFVYPVK D ENIYISI+ +  
Sbjct: 140 GCIVCPSTDSTFDLRTGEIREWYPKNPVLRVLTPALRKLFVYPVKYDEENIYISIRDSGK 199

Query: 189 SGGSAEIIFSGKAQPGFTASDVNIEEVRMVIDEDVGGFGFTNKNELINGKAAIIGFLLLI 248
           +  +AEI+FSGKAQPG TA++VN++EVRM++DE   GFGFT KNE+INGKAA+IGFLLL+
Sbjct: 200 TEAAAEIVFSGKAQPGLTATNVNVDEVRMIVDEGSEGFGFTKKNEVINGKAAVIGFLLLL 259

Query: 249 DFEXXXXXXXXXXXXXXDFIYAISRAF 275
           DFE              DF+Y+ S AF
Sbjct: 260 DFELLTGKGLLKGTGFLDFLYSASDAF 286



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.141    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,495,015
Number of extensions: 183918
Number of successful extensions: 386
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 180
Effective length of database: 8,447,217
Effective search space: 1520499060
Effective search space used: 1520499060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)