BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0241200 Os11g0241200|AK111322
(178 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G02360.1 | chr4:1041179-1041643 FORWARD LENGTH=155 115 1e-26
AT1G02816.1 | chr1:621637-622137 FORWARD LENGTH=167 106 7e-24
AT1G02813.1 | chr1:620773-621222 FORWARD LENGTH=150 104 2e-23
AT4G02370.1 | chr4:1042458-1042961 FORWARD LENGTH=168 104 2e-23
AT1G55265.1 | chr1:20617326-20617853 FORWARD LENGTH=176 72 1e-13
AT5G19860.1 | chr5:6714533-6715837 REVERSE LENGTH=182 68 3e-12
AT5G19590.1 | chr5:6611614-6612069 REVERSE LENGTH=152 59 1e-09
AT5G54530.1 | chr5:22152781-22154201 FORWARD LENGTH=162 54 5e-08
>AT4G02360.1 | chr4:1041179-1041643 FORWARD LENGTH=155
Length = 154
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 80/131 (61%), Gaps = 10/131 (7%)
Query: 39 PTAYEMVERYGFPRGILPEGVESYVLRPD-GSFEVRLSGDGNGGGDCEFRVGDGGAYLLR 97
PTAY+ V+ Y P GILP+GV Y L P G+F+V + CEF + +Y L+
Sbjct: 27 PTAYDAVKLYNLPPGILPKGVVDYELNPKTGNFKVYFNDT------CEFTIQ---SYQLK 77
Query: 98 YGRRVAGVAMEGSIRSLEGVSVKVLFAWLGIGRVDRAGDDLRFFVGPLSAAFPLANFADC 157
Y ++GV G +++L+GVSVKVLF W+ I V G DL F VG SA+FP ANF +
Sbjct: 78 YKSTISGVISPGHVKNLKGVSVKVLFFWVNIAEVSLDGADLDFSVGIASASFPAANFEES 137
Query: 158 PRCRCGFDCDT 168
P+C CGFDC+
Sbjct: 138 PQCGCGFDCNN 148
>AT1G02816.1 | chr1:621637-622137 FORWARD LENGTH=167
Length = 166
Score = 106 bits (264), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 72/131 (54%), Gaps = 9/131 (6%)
Query: 39 PTAYEMVERYGFPRGILPEGVESYVL-RPDGSFEVRLSGDGNGGGDCEFRVGDGGAYLLR 97
PTAY +++ Y FP GILP+GV SY L + G F + C F + G+Y L
Sbjct: 30 PTAYTLLQSYNFPVGILPKGVVSYDLDKSTGQFHAYFNKS------CSFALQ--GSYQLD 81
Query: 98 YGRRVAGVAMEGSIRSLEGVSVKVLFAWLGIGRVDRAGDDLRFFVGPLSAAFPLANFADC 157
Y ++G E I L GV VKVLF WL I V R GD+L F VG SA F + F +
Sbjct: 82 YKSTISGYISENKITKLTGVKVKVLFLWLNIVEVIRNGDELEFSVGITSANFEIDEFYES 141
Query: 158 PRCRCGFDCDT 168
P+C CGFDC T
Sbjct: 142 PQCGCGFDCKT 152
>AT1G02813.1 | chr1:620773-621222 FORWARD LENGTH=150
Length = 149
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 74/128 (57%), Gaps = 10/128 (7%)
Query: 40 TAYEMVERYGFPRGILPEGVESYVL-RPDGSFEVRLSGDGNGGGDCEFRVGDGGAYLLRY 98
+ Y+++E Y PRGILPEGV Y L R G F+VR + C+F + +Y ++Y
Sbjct: 24 SVYQVLENYTLPRGILPEGVHDYDLNRRTGVFKVRFNTT------CQFSID---SYKVKY 74
Query: 99 GRRVAGVAMEGSIRSLEGVSVKVLFAWLGIGRVDRAGDDLRFFVGPLSAAFPLANFADCP 158
++G+ G + L GVSVKVLF W+ I V R GDD+ FFVG S F F D P
Sbjct: 75 KPVISGIITRGRVIRLIGVSVKVLFFWINISEVSRDGDDVEFFVGAASEEFSSKYFVDSP 134
Query: 159 RCRCGFDC 166
+C CGF+C
Sbjct: 135 KCGCGFNC 142
>AT4G02370.1 | chr4:1042458-1042961 FORWARD LENGTH=168
Length = 167
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 71/130 (54%), Gaps = 9/130 (6%)
Query: 38 TPTAYEMVERYGFPRGILPEGVESYVL-RPDGSFEVRLSGDGNGGGDCEFRVGDGGAYLL 96
TPTAY +++ Y FP GILP+GV +Y L G F C F + G+Y L
Sbjct: 29 TPTAYSLLQSYNFPVGILPKGVVAYDLDTTTGKFHAYF------NDSCSFNLV--GSYQL 80
Query: 97 RYGRRVAGVAMEGSIRSLEGVSVKVLFAWLGIGRVDRAGDDLRFFVGPLSAAFPLANFAD 156
Y ++G E ++ L GV VKVLF WL I V R GD++ F VG SA F + F +
Sbjct: 81 NYKSTISGYISENKLKKLTGVKVKVLFLWLNIVEVIRNGDEMEFSVGITSANFAIQEFLE 140
Query: 157 CPRCRCGFDC 166
P+C CGF+C
Sbjct: 141 SPQCGCGFEC 150
>AT1G55265.1 | chr1:20617326-20617853 FORWARD LENGTH=176
Length = 175
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 42 YEMVERYGFPRGILPEGVESYVLRPDGSFEVRLSGDGNGGGDCEFRVGDGGAYLLRYGRR 101
++++ RYGFP+G+LP V+SY + DG F V L C + D L+ YG+
Sbjct: 55 HDLLPRYGFPKGLLPNNVKSYTISDDGDFTVDL------ISSCYVKFSDQ---LVFYGKN 105
Query: 102 VAGVAMEGSIRSLEGVSVKVLFAWLGIGRV--DRAGDDLRFFVGPLSAAFPLANFADCPR 159
+AG GS++ + G+ K F WL I + D + + F VG +S P + F + P
Sbjct: 106 IAGKLSYGSVKDVRGIQAKEAFLWLPITAMESDPSSATVVFSVGFVSKTLPASMFENVPS 165
Query: 160 C 160
C
Sbjct: 166 C 166
>AT5G19860.1 | chr5:6714533-6715837 REVERSE LENGTH=182
Length = 181
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 13/125 (10%)
Query: 40 TAYEMVERYGFPRGILPEGVESYVLRPDGSFEVRLSGDGNGGGDCEFRVGDGGAYLLRYG 99
T YE++ +YG P G+LP+ V + L DG F V L CE YL+ Y
Sbjct: 35 TVYELLPKYGLPSGLLPDTVTDFTLSDDGRFVVHLP------NSCEIEFD----YLVHYD 84
Query: 100 RRVAGVAMEGSIRSLEGVSVKVLFAWLGIGRVD---RAGDDLRFFVGPLSAAFPLANFAD 156
+ ++G GSI L+G+ VK F WL + + D + F VG ++ + F
Sbjct: 85 KTISGRIGYGSITELKGIQVKKFFIWLDVDEIKVDLPPSDSIYFKVGFINKKLDIDQFKT 144
Query: 157 CPRCR 161
C
Sbjct: 145 IHSCH 149
>AT5G19590.1 | chr5:6611614-6612069 REVERSE LENGTH=152
Length = 151
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 39 PT-AYEMVERYGFPRGILPEGVESYVL-RPDGSFEVRLSGDGNGGGDCEFRVGDGGAYLL 96
PT A+ + +GFP G+LP V+ Y L + G F + L+G C+ + Y+
Sbjct: 28 PTRAHAELTNHGFPIGLLPLSVKDYFLNQTSGDFSLFLNGA------CKITLPPDN-YIA 80
Query: 97 RYGRRVAGVAMEGSIRSLEGVSVKVLFAWLGIGRVDRAGDDLRFFVGPLSAAFPLANFAD 156
Y +V G +G I L+G+ V+ F I + +GD+L F V ++A +P NF +
Sbjct: 81 TYSNKVTGRISQGKIAELQGIRVRAFFKSWSITGIRSSGDNLVFEVAGITAKYPSKNFDE 140
Query: 157 CPRCR 161
C
Sbjct: 141 SLDCE 145
>AT5G54530.1 | chr5:22152781-22154201 FORWARD LENGTH=162
Length = 161
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 13/126 (10%)
Query: 39 PTAYEMVERYGFPRGILPEGVESYVLRPDGSFEVRLSGDGNGGGDCEFRVGDGGAYLLRY 98
PT ++++ G P G+LP+ V+SY+L DG EV L+ + + +
Sbjct: 27 PTVHDVLRSEGLPAGLLPQEVDSYILHNDGRLEVFLAAPCYAKFETN----------VHF 76
Query: 99 GRRVAGVAMEGSIRSLEGVSVKVLFAWLGIGRVDRAGDD---LRFFVGPLSAAFPLANFA 155
V G GS+ +EG+S K LF WL + + + + F +G L+ F
Sbjct: 77 EAVVRGNLSYGSLVGVEGLSQKELFLWLQVKDIVVENPNSGVIVFDIGVAFKQLSLSLFE 136
Query: 156 DCPRCR 161
D P+C+
Sbjct: 137 DPPKCK 142
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.145 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,246,574
Number of extensions: 140552
Number of successful extensions: 340
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 8
Length of query: 178
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 86
Effective length of database: 8,584,297
Effective search space: 738249542
Effective search space used: 738249542
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)