BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0240900 Os11g0240900|AK099694
         (451 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G18420.2  | chr5:6105638-6109337 REVERSE LENGTH=443            423   e-119

>AT5G18420.2 | chr5:6105638-6109337 REVERSE LENGTH=443
          Length = 442

 Score =  423 bits (1088), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/434 (50%), Positives = 299/434 (68%), Gaps = 14/434 (3%)

Query: 31  LRPAECADLLGLVAGVKRPLEDVVADFLARIQPERRLRFGAAINFVLKDKMMLRPAERLV 90
           +R  E A +L L+    RP+EDV+++F ++ +  R L    +++ +L+D+ M +  ERL+
Sbjct: 9   MRIEESAIVLSLLKSDLRPMEDVLSEFDSKFESARYLSVCNSLSMMLQDQQMFKNTERLI 68

Query: 91  AFTILHQGYSSQLE--NPFVPLIIHAACDETSDKPEQLFLQLLLNSTNGDNDREILKHSA 148
           AF I++Q YSSQ    NPF+  +I AAC+E  +K E+ FL  LL   + +N +EILK SA
Sbjct: 69  AFGIIYQCYSSQKPSFNPFLSEMISAACNEQLEKSERAFLLHLLQWNSYNNVKEILKLSA 128

Query: 149 ADYLEESAYASQVLLTREQLERQYTCNEVQPQPSTGSFREATVRSVIPDPDISQSCTDSS 208
            DY+     ++       +L+R+Y  ++  P PS+  F + +++ ++ DPD+ + C  +S
Sbjct: 129 VDYIRSFDPSTHDFPELGELQREYG-DKADPGPSSHIFADYSLKKLLHDPDVPRGCDPNS 187

Query: 209 ---------EISITKSNRDNLVTCLLQQTSLDGIGPQWIRPPPPRLEILDGELQWLNLDN 259
                       I   +RD  ++  L   ++ G+GP+WIRP PPR  +   EL W++ DN
Sbjct: 188 PEFDVQAGVNPRIGSGDRDEALSGFLGNLTMGGLGPRWIRPCPPRYPVHQSELLWIDPDN 247

Query: 260 NHELLWDSSMCADTSRGAAIRDLVGKACKGPLSPAQQEQVLVELAKDWKLVYHCGMTPQK 319
            HEL+WD  MCADTS GA +RDL+ K  K  LSP +QE ++ ELA D KLV+HCG+TP+K
Sbjct: 248 KHELVWDDKMCADTSSGATVRDLLVKGLKVTLSPTEQEDIITELANDPKLVFHCGITPRK 307

Query: 320 LPDLVEHNPLVAVEVLSKLINSPDMDAYFDILVHMEMSLHSMEVVNRLTTAVDLPPGFIH 379
           LP LVEHNP +AVE+L+KL NS +++ Y++ L +M+MSLHSMEVVNRLTTAV+LP  FI 
Sbjct: 308 LPQLVEHNPQIAVEILTKLNNSTEINDYYEALGNMDMSLHSMEVVNRLTTAVELPKDFIR 367

Query: 380 DYISNCIRSCQNIK--DKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIAFSRI 437
            YI+NCI SC+N K  DKYMQNRLVRLVCVFLQSLIRNKIINV+DLFIEVQAFCI FSR+
Sbjct: 368 MYITNCISSCENAKQQDKYMQNRLVRLVCVFLQSLIRNKIINVKDLFIEVQAFCIEFSRV 427

Query: 438 REAAGLFRLLKSLE 451
           REAAGLFRLLK L+
Sbjct: 428 REAAGLFRLLKQLD 441



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,392,832
Number of extensions: 387927
Number of successful extensions: 970
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 966
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 349
Effective length of database: 8,310,137
Effective search space: 2900237813
Effective search space used: 2900237813
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)