BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0223400 Os11g0223400|AK112108
(406 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G64550.1 | chr5:25801794-25803698 REVERSE LENGTH=635 140 2e-33
AT1G64140.1 | chr1:23804069-23806009 REVERSE LENGTH=647 139 2e-33
AT5G09670.2 | chr5:2996109-2997749 REVERSE LENGTH=547 126 2e-29
AT4G12020.2 | chr4:7201656-7209469 FORWARD LENGTH=1896 105 5e-23
>AT5G64550.1 | chr5:25801794-25803698 REVERSE LENGTH=635
Length = 634
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/274 (37%), Positives = 127/274 (46%), Gaps = 72/274 (26%)
Query: 127 TIFCRAHGGGKRCYYPGCTKSAEEHTDFCLAH-ISRRC-MHEGCFRFARRKTDFCSXXXX 184
T FC+AHGGGKRC + GCTKSAE TD C++H RRC EGC + AR K+ C
Sbjct: 254 TTFCKAHGGGKRCQHLGCTKSAEGKTDLCISHGGGRRCGFPEGCAKAARGKSGLC---IK 310
Query: 185 XXXXXXXXXXXSSRSAESRSGATITHVSSGKNCKSPGCTGTADGVTMLCEKHRMKMACSF 244
+RSAE ++G I+H G+ C+S GCT A G T C+ H C F
Sbjct: 311 HGGGKRCRIESCTRSAEGQAGLCISH-GGGRRCQSSGCTKGAQGSTNYCKAHGGGKRCIF 369
Query: 245 PGCTKMAWGPS----AH------------------------------------------- 257
GCTK A G + AH
Sbjct: 370 AGCTKGAEGSTPLCKAHGGGKRCMFDGGGICPKSVHGGTSFCVAHGGGKRCVVAGCTKSA 429
Query: 258 ------CVRHGAGKRCKFLGCTKSTRRSTDFCKTHGGSGGADDTLCSWRGGESSVGGGED 311
CV+HG GKRCK GC KS + STDFCK HGG CSW GG+
Sbjct: 430 RGRTDCCVKHGGGKRCKSDGCEKSAQGSTDFCKAHGGG-----KRCSW--------GGDW 476
Query: 312 KCDRIARGRSGLCAAHSALVLDDRASCDGTIAPA 345
KC++ ARG+SGLCAAH+++ D S G I P
Sbjct: 477 KCEKFARGKSGLCAAHNSMSQDKAGSKVGLIGPG 510
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 62/132 (46%), Gaps = 17/132 (12%)
Query: 196 SSRSAESRSGATITHVSSGKNCKSPGCTGTADGVTMLCEKHRMKMACSFPGCTKMAWGPS 255
S RSA + S + +S+ K CK GC A G + LC H C GC K A +
Sbjct: 197 SDRSASATS--SQQRMSNPKKCKFMGCVKGARGASGLCIGHGGGQRCQKLGCNKGAESKT 254
Query: 256 AHCVRHGAGKRCKFLGCTKSTRRSTDFCKTHGGSGGADDTLCSWRGGESSVGGGEDKCDR 315
C HG GKRC+ LGCTKS TD C +HGG C + + C +
Sbjct: 255 TFCKAHGGGKRCQHLGCTKSAEGKTDLCISHGGG-----RRCGF----------PEGCAK 299
Query: 316 IARGRSGLCAAH 327
ARG+SGLC H
Sbjct: 300 AARGKSGLCIKH 311
>AT1G64140.1 | chr1:23804069-23806009 REVERSE LENGTH=647
Length = 646
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 126/272 (46%), Gaps = 65/272 (23%)
Query: 127 TIFCRAHGGGKRCYYPGCTKSAEEHTDFCLAH-ISRRCMHEGCFRFARRKTDFCSXXXXX 185
T++C+AHGGG+RC + GCTKSAE TDFC+AH RRC HE C R AR ++ C
Sbjct: 297 TVYCKAHGGGRRCEFLGCTKSAEGRTDFCIAHGGGRRCSHEDCTRAARGRSGLC---IRH 353
Query: 186 XXXXXXXXXXSSRSAESRSGATITHVSSGKNCKSPGCTGTADGVTMLCEKHRMKMACSFP 245
++SAE SG I+H G+ C+S GCT A G TM C+ H C+
Sbjct: 354 GGGKRCQRENCTKSAEGLSGLCISH-GGGRRCQSNGCTKGAQGSTMFCKAHGGGKRCTHS 412
Query: 246 GCTKMAWGPS--------------------------------AH---------------- 257
GCTK A G + AH
Sbjct: 413 GCTKGAEGSTPFCKGHGGGKRCAFQGDDPCSKSVHGGTNFCVAHGGGKRCAVPECTKSAR 472
Query: 258 -----CVRHGAGKRCKFLGCTKSTRRSTDFCKTHGGSGGADDTLCSWRGGESSVGG--GE 310
CVRHG GKRC+ GC KS + STDFCK HGG C+W E+ G
Sbjct: 473 GRTDFCVRHGGGKRCQSEGCGKSAQGSTDFCKAHGGG-----KRCAWGQPETEYAGQSSS 527
Query: 311 DKCDRIARGRSGLCAAHSALVLDDRASCDGTI 342
C ARG++GLCA H++LV D+R TI
Sbjct: 528 GPCTSFARGKTGLCALHNSLVQDNRVHGGMTI 559
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 208 ITHVSSGKNCKSPGCTGTADGVTMLCEKHRMKMACSFPGCTKMAWGPSAHCVRHGAGKRC 267
+ + SS K C+ GC A G + C H C GC K A G + +C HG G+RC
Sbjct: 250 LKNSSSSKLCQVEGCHKGARGASGRCISHGGGRRCQKHGCHKGAEGRTVYCKAHGGGRRC 309
Query: 268 KFLGCTKSTRRSTDFCKTHGGSGGADDTLCSWRGGESSVGGGEDKCDRIARGRSGLCAAH 327
+FLGCTKS TDFC HGG CS + C R ARGRSGLC H
Sbjct: 310 EFLGCTKSAEGRTDFCIAHGGG-----RRCS-----------HEDCTRAARGRSGLCIRH 353
Query: 328 SALVLDDRASC 338
R +C
Sbjct: 354 GGGKRCQRENC 364
>AT5G09670.2 | chr5:2996109-2997749 REVERSE LENGTH=547
Length = 546
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/276 (35%), Positives = 126/276 (45%), Gaps = 74/276 (26%)
Query: 127 TIFCRAHGGGKRCYYPGCTKSAEEHTDFCLAH-ISRRC-MHEGCFRFARRKTDFCSXXXX 184
T FC+ HGGGKRC + GCTKSAE TDFC++H RRC EGC + AR ++ C
Sbjct: 194 TTFCKTHGGGKRCEHLGCTKSAEGKTDFCISHGGGRRCEFLEGCDKAARGRSGLC---IK 250
Query: 185 XXXXXXXXXXXSSRSAESRSGATITHV-------------------------SSGKNCKS 219
+RSAE ++G I+H GK C
Sbjct: 251 HGGGKRCNIEDCTRSAEGQAGLCISHGGGKRCQYFSGCEKGAQGSTNYCKAHGGGKRCIF 310
Query: 220 PGCTGTADGVTMLCEKH---RMKMA-------------------------CSFPGCTKMA 251
GC+ A+G T LC+ H + +A C GCTK A
Sbjct: 311 SGCSKGAEGSTPLCKAHGGGKRCLADGGGICSKSVHGGTNFCVAHGGGKRCVVVGCTKSA 370
Query: 252 WGPSAHCVRHGAGKRCKFLGCTKSTRRSTDFCKTHGGSGGADDTLCSWRGGESSVGGGED 311
G + CV+HG GKRCK + C KS + STDFCK HGG CSW G+
Sbjct: 371 RGRTDSCVKHGGGKRCKIIDCEKSAQGSTDFCKAHGGG-----KRCSW---------GDG 416
Query: 312 KCDRIARGRSGLCAAHSALVLDDR--ASCDGTIAPA 345
KC++ ARG+SGLCAAH+ ++ + S G I P
Sbjct: 417 KCEKFARGKSGLCAAHNTIMSRENKDGSKSGLIGPG 452
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 91/201 (45%), Gaps = 18/201 (8%)
Query: 129 FCRAHGGGKRCYYPGCTKSAEEHTDFCLAH-ISRRCMHEGCFRFARRKTDFCSXXXXXXX 187
C +HGGG+RC PGC K AE T FC H +RC H GC + A KTDFC
Sbjct: 171 LCISHGGGQRCQKPGCNKGAESKTTFCKTHGGGKRCEHLGCTKSAEGKTDFC--ISHGGG 228
Query: 188 XXXXXXXXSSRSAESRSGATITHVSSGKNCKSPGCTGTADGVTMLCEKHRMKMACS-FPG 246
++A RSG I H GK C CT +A+G LC H C F G
Sbjct: 229 RRCEFLEGCDKAARGRSGLCIKH-GGGKRCNIEDCTRSAEGQAGLCISHGGGKRCQYFSG 287
Query: 247 CTKMAWGPSAHCVRHGAGKRCKFLGCTKSTRRSTDFCKTHGGSGGADDTLCSWRGGESSV 306
C K A G + +C HG GKRC F GC+K ST CK HG GG+ +
Sbjct: 288 CEKGAQGSTNYCKAHGGGKRCIFSGCSKGAEGSTPLCKAHG-------------GGKRCL 334
Query: 307 GGGEDKCDRIARGRSGLCAAH 327
G C + G + C AH
Sbjct: 335 ADGGGICSKSVHGGTNFCVAH 355
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 211 VSSGKNCKSPGCTGTADGVTMLCEKHRMKMACSFPGCTKMAWGPSAHCVRHGAGKRCKFL 270
S+ + CK GC A G + LC H C PGC K A + C HG GKRC+ L
Sbjct: 150 TSNPRKCKFMGCVKGARGASGLCISHGGGQRCQKPGCNKGAESKTTFCKTHGGGKRCEHL 209
Query: 271 GCTKSTRRSTDFCKTHGGSGGADDTLCSWRGGESSVGGGEDKCDRIARGRSGLCAAH 327
GCTKS TDFC +HGG C + G CD+ ARGRSGLC H
Sbjct: 210 GCTKSAEGKTDFCISHGGG-----RRCEFLEG----------CDKAARGRSGLCIKH 251
>AT4G12020.2 | chr4:7201656-7209469 FORWARD LENGTH=1896
Length = 1895
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 82/159 (51%), Gaps = 5/159 (3%)
Query: 127 TIFCRAHGGGKRCYYPGCTKSAEEHTDFCLAHIS-RRCMHEGCFRFARRKTDFCSXXXXX 185
T++C+AHGGG+RC Y GCTK AE TDFC+AH RRC HE C R A +T+FC
Sbjct: 131 TVYCKAHGGGRRCEYLGCTKGAEGSTDFCIAHGGGRRCNHEDCTRSAWGRTEFC---VKH 187
Query: 186 XXXXXXXXXXSSRSAESRSGATITHVSSGKNCKSPGCTGTADGVTMLCEKHRMKMACSFP 245
+SA H GK C CTG A G + LC H C
Sbjct: 188 GGGARCKTYGCGKSASGPLPFCRAH-GGGKKCSHEDCTGFARGRSGLCLMHGGGKRCQRE 246
Query: 246 GCTKMAWGPSAHCVRHGAGKRCKFLGCTKSTRRSTDFCK 284
CTK A G S C+ HG G+RC+ +GCTK + S FCK
Sbjct: 247 NCTKSAEGLSGLCISHGGGRRCQSIGCTKGAKGSKMFCK 285
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 74/198 (37%), Gaps = 69/198 (34%)
Query: 130 CRAHGGGKRCYYPGCTKSAEEHTDFCLAHISRRCMHEGCFRFARRKTDFCSXXXXXXXXX 189
C +HGGG+RC P C K AE T +C A H G
Sbjct: 109 CISHGGGRRCQKPDCQKGAEGKTVYCKA-------HGG---------------------- 139
Query: 190 XXXXXXSSRSAESRSGATITHVSSGKNCKSPGCTGTADGVTMLCEKHRMKMACSFPGCTK 249
G+ C+ GCT A+G T C H C+ CT+
Sbjct: 140 ------------------------GRRCEYLGCTKGAEGSTDFCIAHGGGRRCNHEDCTR 175
Query: 250 MAWGPSAHCVRHGAGKRCKFLGCTKSTRRSTDFCKTHGGSGGADDTLCSWRGGESSVGGG 309
AWG + CV+HG G RCK GC KS FC+ HGG CS
Sbjct: 176 SAWGRTEFCVKHGGGARCKTYGCGKSASGPLPFCRAHGGGKK-----CS----------- 219
Query: 310 EDKCDRIARGRSGLCAAH 327
+ C ARGRSGLC H
Sbjct: 220 HEDCTGFARGRSGLCLMH 237
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.132 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,653,301
Number of extensions: 290995
Number of successful extensions: 847
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 721
Number of HSP's successfully gapped: 16
Length of query: 406
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 305
Effective length of database: 8,337,553
Effective search space: 2542953665
Effective search space used: 2542953665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)