BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0216400 Os11g0216400|Os11g0216400
(374 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G20020.1 | chr4:10844433-10846085 REVERSE LENGTH=420 169 2e-42
AT1G11430.1 | chr1:3847273-3848938 FORWARD LENGTH=233 161 6e-40
AT5G44780.1 | chr5:18068100-18070544 FORWARD LENGTH=724 146 2e-35
AT3G06790.1 | chr3:2144564-2145743 REVERSE LENGTH=245 143 1e-34
AT2G33430.1 | chr2:14162732-14164729 FORWARD LENGTH=220 128 4e-30
AT2G35240.1 | chr2:14845099-14846262 REVERSE LENGTH=233 126 2e-29
AT1G32580.1 | chr1:11784108-11785430 FORWARD LENGTH=230 125 5e-29
AT3G15000.1 | chr3:5050321-5052121 FORWARD LENGTH=396 118 4e-27
AT1G72530.2 | chr1:27312999-27313937 FORWARD LENGTH=193 90 2e-18
AT3G20930.1 | chr3:7331739-7333749 FORWARD LENGTH=375 52 6e-07
>AT4G20020.1 | chr4:10844433-10846085 REVERSE LENGTH=420
Length = 419
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/122 (65%), Positives = 98/122 (80%), Gaps = 3/122 (2%)
Query: 77 EKISPDEILFEGCDYNHWLITMEFPDPKPTR--EEMIETYLQTLAKVVG-SYEEAKKRMY 133
++I+ D +LFEGCDYNHWLITM+F + + EEM+ Y +T A+ +G S EEAK+RMY
Sbjct: 73 DEITEDTVLFEGCDYNHWLITMDFSKEETPKSPEEMVAAYEETCAQGLGISVEEAKQRMY 132
Query: 134 AFSTTTYVGFQAVMTEEMSEKFRGLPGVVFILPDSYLYPETKEYGGDKYENGVITPRPPP 193
A STTTY GFQA+MTE+ SEKF+ LPGVVFILPDSY+ P+ KEYGGDKYENGVIT RPPP
Sbjct: 133 ACSTTTYQGFQAIMTEQESEKFKDLPGVVFILPDSYIDPQNKEYGGDKYENGVITHRPPP 192
Query: 194 VH 195
+
Sbjct: 193 IQ 194
>AT1G11430.1 | chr1:3847273-3848938 FORWARD LENGTH=233
Length = 232
Score = 161 bits (407), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 74/115 (64%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 82 DEILFEGCDYNHWLITMEFP-DPKPTREEMIETYLQTLAKVVGSYEEAKKRMYAFSTTTY 140
+ I+ GCDYNHWLI MEFP DP P+R++MI+TYL TLA V+GS EEAKK MYAFSTTTY
Sbjct: 78 ETIMLPGCDYNHWLIVMEFPKDPAPSRDQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTY 137
Query: 141 VGFQAVMTEEMSEKFRGLPGVVFILPDSYLYPETKEYGGDKYENGVITPRPPPVH 195
GFQ + EE SEKF+GLPGV+++LPDSY+ + K+YGGDKY NG I P P +
Sbjct: 138 TGFQCTIDEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYINGEIIPCTYPTY 192
>AT5G44780.1 | chr5:18068100-18070544 FORWARD LENGTH=724
Length = 723
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/121 (61%), Positives = 86/121 (71%), Gaps = 5/121 (4%)
Query: 76 DEKISPDEILFEGCDYNHWLITMEFP-DPKPTREEMIETYLQTLAK-VVGSYEEAKKRMY 133
++ PD EGCD+NHWLITM FP D P+REEMI + QT AK + S EEAKK++Y
Sbjct: 70 EDSFMPDN---EGCDFNHWLITMNFPKDNLPSREEMISIFEQTCAKGLAISLEEAKKKIY 126
Query: 134 AFSTTTYVGFQAVMTEEMSEKFRGLPGVVFILPDSYLYPETKEYGGDKYENGVITPRPPP 193
A TT+Y GFQA MT EKFR LPGV +I+PDSY+ E K YGGDKYENGVITP P P
Sbjct: 127 AICTTSYQGFQATMTIGEVEKFRDLPGVQYIIPDSYIDVENKVYGGDKYENGVITPGPVP 186
Query: 194 V 194
V
Sbjct: 187 V 187
>AT3G06790.1 | chr3:2144564-2145743 REVERSE LENGTH=245
Length = 244
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 83/110 (75%)
Query: 82 DEILFEGCDYNHWLITMEFPDPKPTREEMIETYLQTLAKVVGSYEEAKKRMYAFSTTTYV 141
+ IL +GCDY HWLI MEF DPKPT EEMI +Y++TL V+G EEAKK++Y+ T+TY
Sbjct: 85 ETILLDGCDYEHWLIVMEFTDPKPTEEEMINSYVKTLTSVLGWQEEAKKKIYSVCTSTYT 144
Query: 142 GFQAVMTEEMSEKFRGLPGVVFILPDSYLYPETKEYGGDKYENGVITPRP 191
GF A+++EE+S K + LPGV+++LPDSYL K+YGGD Y G + PRP
Sbjct: 145 GFGALISEELSCKVKALPGVLWVLPDSYLDVPNKDYGGDLYVEGKVIPRP 194
>AT2G33430.1 | chr2:14162732-14164729 FORWARD LENGTH=220
Length = 219
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
Query: 85 LFEGCDYNHWLITMEFPDPK-PTREEMIETYLQTLAKVVGSYEEAKKRMYAFSTTTYVGF 143
LF GCDY HWLI M+ P + T+++MI+ Y+QTLAKVVGS EEAKKR+Y S Y+GF
Sbjct: 78 LFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEAKKRIYNVSCERYLGF 137
Query: 144 QAVMTEEMSEKFRGLPGVVFILPDSYLYPETKEYGGDKYENGVITPRPP 192
+ EE S K GLPGV+F+LPDSY+ PE K+YG + + NG I R P
Sbjct: 138 GCEIDEETSTKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEIVQRSP 186
>AT2G35240.1 | chr2:14845099-14846262 REVERSE LENGTH=233
Length = 232
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Query: 85 LFEGCDYNHWLITMEFPD-PKPTREEMIETYLQTLAKVVGSYEEAKKRMYAFSTTTYVGF 143
LF GCDY HWLI ME P +++MI+ Y+QTLAK+VGS EEA+K++Y S Y GF
Sbjct: 90 LFPGCDYEHWLIVMEKPGGENAQKQQMIDCYVQTLAKIVGSEEEARKKIYNVSCERYFGF 149
Query: 144 QAVMTEEMSEKFRGLPGVVFILPDSYLYPETKEYGGDKYENGVITPRPP 192
+ EE S K GLPGV+F+LPDSY+ PE K+YG + + NG + PRPP
Sbjct: 150 GCEIDEETSNKLEGLPGVLFVLPDSYVDPEFKDYGAELFVNGEVVPRPP 198
>AT1G32580.1 | chr1:11784108-11785430 FORWARD LENGTH=230
Length = 229
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Query: 85 LFEGCDYNHWLITMEFPD-PKPTREEMIETYLQTLAKVVGSYEEAKKRMYAFSTTTYVGF 143
LF GCDY HWLI M+ P T+++MI+ Y+QTLAK++GS EEAKK++Y S Y GF
Sbjct: 87 LFPGCDYEHWLIVMDKPGGENATKQQMIDCYVQTLAKIIGSEEEAKKKIYNVSCERYFGF 146
Query: 144 QAVMTEEMSEKFRGLPGVVFILPDSYLYPETKEYGGDKYENGVITPRPP 192
+ EE S K GLPGV+FILPDSY+ E K+YG + + NG I RPP
Sbjct: 147 GCEIDEETSNKLEGLPGVLFILPDSYVDQENKDYGAELFVNGEIVQRPP 195
>AT3G15000.1 | chr3:5050321-5052121 FORWARD LENGTH=396
Length = 395
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 80/114 (70%)
Query: 82 DEILFEGCDYNHWLITMEFPDPKPTREEMIETYLQTLAKVVGSYEEAKKRMYAFSTTTYV 141
+ IL +GCD+ HWL+ +E P +PTR+E+I++Y++TLA++VGS +EA+ ++Y+ ST Y
Sbjct: 88 ETILLDGCDFEHWLVVVEPPQGEPTRDEIIDSYIKTLAQIVGSEDEARMKIYSVSTRCYY 147
Query: 142 GFQAVMTEEMSEKFRGLPGVVFILPDSYLYPETKEYGGDKYENGVITPRPPPVH 195
F A+++E++S K + L V ++LPDSYL K+YGG+ + +G P P H
Sbjct: 148 AFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFIDGKAVPYDPKYH 201
>AT1G72530.2 | chr1:27312999-27313937 FORWARD LENGTH=193
Length = 192
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Query: 85 LFEGCDYNHWLITMEFPDPKPTREEMIETYLQTLAKVVGSYEEAKKRMYAFSTTTYVGFQ 144
L EGCDY HWL+ M+ P+ PTR +++++++TLA +GS EEAK+ +Y+ ST Y F
Sbjct: 48 LVEGCDYKHWLVLMKPPNGYPTRNHIVQSFVETLAMALGSEEEAKRSIYSVSTKYYYAFG 107
Query: 145 AVMTEEMSEKFRGLPGVVFILPDSYLYPETKEYG----GDKYENGVITPRPPPVH 195
+ E ++ K R LP V ++LPDS++ YG G+ + +G + P H
Sbjct: 108 CRIHEPLTYKIRSLPDVKWVLPDSFIVDGDNRYGVFFAGEPFVDGEVVPYDEKYH 162
>AT3G20930.1 | chr3:7331739-7333749 FORWARD LENGTH=375
Length = 374
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 92 NHWLITMEFP-DPKPTREEMIETYLQTLAKVVGSYEEAKKRMYAFSTTTYVGFQAVMTEE 150
++W++ ++ P ++ M++ Y++ LAKV+G+ ++A+ +Y S T+ GF + E+
Sbjct: 71 SYWMVLLDKPPHWVSSKSAMVDYYVEILAKVLGNEKDAQVSIYDASFDTHFGFCCHIDED 130
Query: 151 MSEKFRGLPGVVFILPDSYLYPETKEYG 178
S + LPGVV I P+ E K YG
Sbjct: 131 ASRQLASLPGVVSIRPEQDYSSEKKNYG 158
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 85 LFEGCDYNHWLITMEFPDP-KPTREEMIETYLQTLAKVVGSYEEAKKRMYAFSTTTYVGF 143
LF+ HW++ ++ P T+ +M++ +Q L+KV+ + ++A+ +Y S + GF
Sbjct: 167 LFDHGTVKHWMVRIDKPGVGIVTKAQMVDHCVQLLSKVLWNEKDAQMCLYHVSWQSDFGF 226
Query: 144 QAVMTEEMSEKFRGLPGVVFILPDSYLYPETKEYGGDKYENG 185
+ E + + G+PGV+ ++PD+ K+Y GD ++
Sbjct: 227 CCDLDERSAVELAGVPGVLAVVPDNSFESLNKDYEGDSTQDS 268
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.135 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,231,292
Number of extensions: 415993
Number of successful extensions: 2888
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2890
Number of HSP's successfully gapped: 12
Length of query: 374
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 274
Effective length of database: 8,364,969
Effective search space: 2292001506
Effective search space used: 2292001506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 112 (47.8 bits)