BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0197400 Os11g0197400|AK120356
(139 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G71900.1 | chr1:27061754-27064053 FORWARD LENGTH=344 130 3e-31
AT1G34470.1 | chr1:12604574-12606758 FORWARD LENGTH=369 129 4e-31
AT4G09640.1 | chr4:6088433-6090604 REVERSE LENGTH=387 125 8e-30
AT4G13800.1 | chr4:8002129-8003858 REVERSE LENGTH=337 124 2e-29
AT3G23870.1 | chr3:8620253-8621755 FORWARD LENGTH=336 120 3e-28
AT2G21120.1 | chr2:9052103-9054266 REVERSE LENGTH=329 105 6e-24
AT4G38730.1 | chr4:18080484-18082305 REVERSE LENGTH=327 101 2e-22
>AT1G71900.1 | chr1:27061754-27064053 FORWARD LENGTH=344
Length = 343
Score = 130 bits (326), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/129 (51%), Positives = 77/129 (59%)
Query: 1 TVIVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXXXXXQEKLHTFGILGCVLCVVGSI 60
T+++GEI ILVTP +EKLH FGILGC LCVVGS
Sbjct: 73 TMLLGEIANFAAYAFAPAILVTPLGAVSIIISAVLAHIILREKLHIFGILGCALCVVGST 132
Query: 61 TIVLHAPQERNIDSVREVWDLATEPGFLCXXXXXXXXXXXXXXXXXPQHGQTNIMVYIGV 120
TIVLHAPQER IDSV EVW+LATEP F+ PQ+GQTN+MVYIG+
Sbjct: 133 TIVLHAPQEREIDSVIEVWNLATEPAFMFYASLVIGAAVFLIIRFVPQYGQTNVMVYIGI 192
Query: 121 CSLLGSLTV 129
CSL+GSL+V
Sbjct: 193 CSLVGSLSV 201
>AT1G34470.1 | chr1:12604574-12606758 FORWARD LENGTH=369
Length = 368
Score = 129 bits (325), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 79/129 (61%)
Query: 1 TVIVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXXXXXQEKLHTFGILGCVLCVVGSI 60
T+IVGEI ILVTP EKLHTFG+LGCVLCVVGSI
Sbjct: 73 TMIVGEIANFAAYAFAPAILVTPLGALSIIISAALAHVILHEKLHTFGLLGCVLCVVGSI 132
Query: 61 TIVLHAPQERNIDSVREVWDLATEPGFLCXXXXXXXXXXXXXXXXXPQHGQTNIMVYIGV 120
TIVLHAPQE+ IDSV +VW+LATEP FL PQ+GQ+++MVYIGV
Sbjct: 133 TIVLHAPQEQEIDSVLQVWNLATEPAFLLYAAAVVGAAIILIVQFVPQYGQSHVMVYIGV 192
Query: 121 CSLLGSLTV 129
CSL+GSL+V
Sbjct: 193 CSLVGSLSV 201
>AT4G09640.1 | chr4:6088433-6090604 REVERSE LENGTH=387
Length = 386
Score = 125 bits (314), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 66/129 (51%), Positives = 78/129 (60%)
Query: 1 TVIVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXXXXXQEKLHTFGILGCVLCVVGSI 60
T+IVGEI ILVTP QEKLHTFGILGC LC+VGS+
Sbjct: 73 TMIVGEIANFAAYAFAPAILVTPLGALSIIISASLAHIILQEKLHTFGILGCALCIVGSV 132
Query: 61 TIVLHAPQERNIDSVREVWDLATEPGFLCXXXXXXXXXXXXXXXXXPQHGQTNIMVYIGV 120
TIVLHAPQE++I SV EVW+LATEP FL P +GQ+++MVYIGV
Sbjct: 133 TIVLHAPQEQDIVSVLEVWNLATEPAFLFYAAAVVGAAIVLIVQFIPLYGQSHVMVYIGV 192
Query: 121 CSLLGSLTV 129
CSL+GSL+V
Sbjct: 193 CSLIGSLSV 201
>AT4G13800.1 | chr4:8002129-8003858 REVERSE LENGTH=337
Length = 336
Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 78/129 (60%)
Query: 1 TVIVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXXXXXQEKLHTFGILGCVLCVVGSI 60
T+IVGEI ILVTP +EKLH FGILGCVLCVVGS
Sbjct: 62 TMIVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILEEKLHMFGILGCVLCVVGST 121
Query: 61 TIVLHAPQERNIDSVREVWDLATEPGFLCXXXXXXXXXXXXXXXXXPQHGQTNIMVYIGV 120
TIVLHAP E+ I+SV++VW LATEPGFL P++G+T+++VY+G+
Sbjct: 122 TIVLHAPHEQGIESVKQVWHLATEPGFLAYSAVVLVVVLALIFYYEPRYGKTHMIVYVGI 181
Query: 121 CSLLGSLTV 129
CSL+GSLTV
Sbjct: 182 CSLMGSLTV 190
>AT3G23870.1 | chr3:8620253-8621755 FORWARD LENGTH=336
Length = 335
Score = 120 bits (300), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 77/129 (59%)
Query: 1 TVIVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXXXXXQEKLHTFGILGCVLCVVGSI 60
T+IVGE+ ILVTP +EKLH FGILGC+LCVVGS
Sbjct: 62 TMIVGEVANFAAYAFAPAILVTPLGALSIIFSAVLAHFILKEKLHMFGILGCILCVVGST 121
Query: 61 TIVLHAPQERNIDSVREVWDLATEPGFLCXXXXXXXXXXXXXXXXXPQHGQTNIMVYIGV 120
TIVLHAP E+ I+SV+++W LA EPGFL P++G+T+++VY+G+
Sbjct: 122 TIVLHAPHEQKIESVKQIWQLAIEPGFLVYSAVIVIVVAILIFYYEPRYGKTHMIVYVGI 181
Query: 121 CSLLGSLTV 129
CSL+GSLTV
Sbjct: 182 CSLMGSLTV 190
>AT2G21120.1 | chr2:9052103-9054266 REVERSE LENGTH=329
Length = 328
Score = 105 bits (263), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 71/129 (55%)
Query: 1 TVIVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXXXXXQEKLHTFGILGCVLCVVGSI 60
T+IVGE +LVTP +EKL G+LGCV C+VGS+
Sbjct: 59 TMIVGEAANFVAYIYAPAVLVTPLGALSIIISAVLAHFLLKEKLKKMGVLGCVSCIVGSV 118
Query: 61 TIVLHAPQERNIDSVREVWDLATEPGFLCXXXXXXXXXXXXXXXXXPQHGQTNIMVYIGV 120
IV+HAP+E+ +SV E+W+LAT+P FL P GQTNI+VYIG+
Sbjct: 119 VIVIHAPKEQTPNSVEEIWNLATQPAFLIYVAITMSIVLALILHFEPLCGQTNILVYIGI 178
Query: 121 CSLLGSLTV 129
CSL+G+LTV
Sbjct: 179 CSLMGALTV 187
>AT4G38730.1 | chr4:18080484-18082305 REVERSE LENGTH=327
Length = 326
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 66/129 (51%)
Query: 1 TVIVGEIXXXXXXXXXXXILVTPXXXXXXXXXXXXXXXXXQEKLHTFGILGCVLCVVGSI 60
T+ GEI +LVTP EKL G+ GCV C+VGS+
Sbjct: 59 TMTFGEIANFVAYVYAPAVLVTPLGALSIIISAVLAHFLLDEKLRKMGVWGCVCCIVGSV 118
Query: 61 TIVLHAPQERNIDSVREVWDLATEPGFLCXXXXXXXXXXXXXXXXXPQHGQTNIMVYIGV 120
IV+HAPQE+ +SV E+W LA +P FL P GQTNI+VYIG+
Sbjct: 119 MIVIHAPQEQTPNSVEEIWKLAMQPAFLIYVAISMSIVLALILYCEPLCGQTNILVYIGI 178
Query: 121 CSLLGSLTV 129
CSL+GSLTV
Sbjct: 179 CSLMGSLTV 187
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.141 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,871,546
Number of extensions: 47136
Number of successful extensions: 135
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 7
Length of query: 139
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 51
Effective length of database: 8,693,961
Effective search space: 443392011
Effective search space used: 443392011
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 106 (45.4 bits)