BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0171400 Os11g0171400|AK107313
         (242 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14590.1  | chr4:8374391-8375962 FORWARD LENGTH=509            208   2e-54

>AT4G14590.1 | chr4:8374391-8375962 FORWARD LENGTH=509
          Length = 508

 Score =  208 bits (530), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 101/226 (44%), Positives = 149/226 (65%), Gaps = 5/226 (2%)

Query: 6   AEICRIGMPGWCTAMAVSPEMETQLLFMMNNVRWGNQKRYQLWFARKHLMVPGGEERIPD 65
           +EI ++        + ++PEMETQL F++ NV+ G+ KR+Q+WF +K L+ P  E  + D
Sbjct: 234 SEIYQLKTSSRYFLLRITPEMETQLRFLLGNVKLGSHKRHQIWFLKKFLLGPEKETLLID 293

Query: 66  IVRFICCGYHPTNKVMQSGVIARWAVIGWLLTSCNKSY-VQANAKVALFYDWLFFDEGKG 124
           IVRF+CC  HPTN++++S ++ RWA+IGWLL  C +++ ++ +  +ALFYDWLFFDE   
Sbjct: 294 IVRFVCCVIHPTNEIIRSEIMPRWAIIGWLLELCRQNHHIERSVMLALFYDWLFFDERID 353

Query: 125 NLMNIEPAMLLMVNSVSQYTDITNMLLEFLFLLVENYDVRRKEAIAECVRNAFAVLVKKG 184
           N+MN+EPA LLMV S+ QY  IT+ LLEFL  LVE YD+ R++ I   + +AF  + +KG
Sbjct: 354 NIMNVEPAALLMVWSIPQYPHITHSLLEFLLHLVETYDITRRDTIVRGLTSAFREIERKG 413

Query: 185 VVPSLDILTCCEKLSPMLRQKLVAFLSSASPEETEKTCGQPIDEAS 230
           V+ SLDI      L+P L++KL   LS       EKT    +++ S
Sbjct: 414 VIRSLDIFLANPALAPDLKKKLANLLSC----HQEKTVHVNLNQVS 455



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.136    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,125,444
Number of extensions: 201040
Number of successful extensions: 553
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 552
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 146
Effective length of database: 8,474,633
Effective search space: 1237296418
Effective search space used: 1237296418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)