BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0168100 Os11g0168100|J075190O20
         (141 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28490.1  | chr1:10016433-10017842 FORWARD LENGTH=246          145   5e-36

>AT1G28490.1 | chr1:10016433-10017842 FORWARD LENGTH=246
          Length = 245

 Score =  145 bits (367), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 77/135 (57%), Positives = 96/135 (71%), Gaps = 10/135 (7%)

Query: 1   VVSIRRCVEAGKQKSAFGHS----------VNPSELVRSKQHIAQDNDDFIASESDQQML 50
           V +++  V AGK  S  GH+           N  E  R  Q+  +D+D F+ SESD+QML
Sbjct: 95  VRNVKSGVLAGKVSSGAGHASEVRRELMRMPNSGEASRYDQYGGRDDDGFVQSESDRQML 154

Query: 51  LIKRQDEELDELSASVQRIGGVGLTIHDELVGQERLLGELSLDMETTTNRLDFVQKRVAM 110
           LIK+QDEELDELS SVQRIGGVGLTIHDELV QER++ EL  +M++T NRL+FVQK+V M
Sbjct: 155 LIKQQDEELDELSKSVQRIGGVGLTIHDELVAQERIIDELDTEMDSTKNRLEFVQKKVGM 214

Query: 111 VLKKASLKGQIMMIA 125
           V+KKA  KGQ+MMI 
Sbjct: 215 VMKKAGAKGQMMMIC 229



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.131    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,269,462
Number of extensions: 80204
Number of successful extensions: 361
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 2
Length of query: 141
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 52
Effective length of database: 8,666,545
Effective search space: 450660340
Effective search space used: 450660340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 106 (45.4 bits)