BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0167500 Os11g0167500|J090009G24
         (82 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G58350.1  | chr1:21663131-21666827 REVERSE LENGTH=795          104   1e-23
AT1G09980.1  | chr1:3256541-3260866 REVERSE LENGTH=803            103   2e-23

>AT1G58350.1 | chr1:21663131-21666827 REVERSE LENGTH=795
          Length = 794

 Score =  104 bits (259), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/66 (66%), Positives = 57/66 (86%)

Query: 1   MQPFLKNLYTYMSISGPHLGYWYSSNSLFNSGLWLMKRLKGVQCMHQLTFSDEQDPQNTF 60
           M+P+ K L+TY+S+SGPHLGY YS+NSLFNSGLWL+K+LK  Q +HQLT +D+ D ++TF
Sbjct: 612 MEPYRKYLHTYLSLSGPHLGYLYSTNSLFNSGLWLLKKLKSTQVIHQLTLTDDPDLRHTF 671

Query: 61  FYKLCK 66
           FYKLCK
Sbjct: 672 FYKLCK 677



>AT1G09980.1 | chr1:3256541-3260866 REVERSE LENGTH=803
          Length = 802

 Score =  103 bits (256), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 46/66 (69%), Positives = 55/66 (83%)

Query: 1   MQPFLKNLYTYMSISGPHLGYWYSSNSLFNSGLWLMKRLKGVQCMHQLTFSDEQDPQNTF 60
           M P+ K  +TY+S+SGPHLGY YSSNSLFNSGLWL+K+LK  Q +HQLT +D+ D QNTF
Sbjct: 620 MDPYRKYFHTYISLSGPHLGYLYSSNSLFNSGLWLLKKLKSTQVIHQLTLTDDPDLQNTF 679

Query: 61  FYKLCK 66
           FYKLCK
Sbjct: 680 FYKLCK 685



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.137    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,987,602
Number of extensions: 70789
Number of successful extensions: 121
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 2
Length of query: 82
Length of database: 11,106,569
Length adjustment: 53
Effective length of query: 29
Effective length of database: 9,653,521
Effective search space: 279952109
Effective search space used: 279952109
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 105 (45.1 bits)