BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0163800 Os11g0163800|AK105532
(419 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G74450.1 | chr1:27982737-27983930 FORWARD LENGTH=398 119 4e-27
AT1G18740.1 | chr1:6464125-6465273 FORWARD LENGTH=383 115 5e-26
AT1G43630.1 | chr1:16436445-16437686 REVERSE LENGTH=414 96 3e-20
AT4G11300.1 | chr4:6872345-6873460 REVERSE LENGTH=372 75 6e-14
AT1G63930.1 | chr1:23727927-23729174 FORWARD LENGTH=416 72 8e-13
AT4G23530.1 | chr4:12279171-12280361 FORWARD LENGTH=397 69 4e-12
>AT1G74450.1 | chr1:27982737-27983930 FORWARD LENGTH=398
Length = 397
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 88/177 (49%), Gaps = 10/177 (5%)
Query: 241 NWSAARQLQAIGSGLAAPRAHE----GGLVAPVYSMGCXXXXXXXXXXXXXPCPDRXXXX 296
+WSA++QLQAIG+ LA PRA + GL+ PVY+M PC DR
Sbjct: 219 SWSASKQLQAIGNNLATPRASDITATNGLIVPVYTMTTVLLFVMWALVAAIPCQDRGLQV 278
Query: 297 XXXXXXXXXXXXXXXXXXXXXXXQERLTEEGKRKDRRNSCGLLKEIHALEKCTQRLAEAI 356
+R+ EE K+++R+N+CGLLKEIH EK ++ + E +
Sbjct: 279 HFNVPRNYQWGGSLMSL------HDRIIEESKKRERKNTCGLLKEIHQFEKTSRLMNELV 332
Query: 357 DAAPVPLSGXXXXXXXXXXXXXXXXXXXXXXGLEPLERQVREVFHRIVRSRMEGLDS 413
D+ PLS GL+P ER+VREVFHRIVRSR EGLD+
Sbjct: 333 DSVQFPLSEEKEMEVRERVEELGKLQEALKNGLDPFERKVREVFHRIVRSRTEGLDT 389
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 74/126 (58%), Gaps = 9/126 (7%)
Query: 51 DLEAFQRHVAAHLADLRGGE-DELLSIEWIRRLLEAFLLCQEEFXXXXXXXXXXXXXXXX 109
+L +FQR VA DL ++LLS+EW+ +LL++FL CQEEF
Sbjct: 41 ELVSFQRKVAERFIDLNASSCEDLLSLEWVGKLLDSFLSCQEEFRSIVINHRSMITKPPM 100
Query: 110 XEKMVGDFYERAVKALDVCNAARDGVDQVRRWERLAGIAASVLLAPG-------EIHEGQ 162
+++V D++ER+VKALDVCNA RDGV+Q+R+W++L I G + EGQ
Sbjct: 101 -DRLVSDYFERSVKALDVCNAIRDGVEQIRQWQKLIEIVICAFNNNGGGSSGKRPLGEGQ 159
Query: 163 LRRARK 168
RRARK
Sbjct: 160 FRRARK 165
>AT1G18740.1 | chr1:6464125-6465273 FORWARD LENGTH=383
Length = 382
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 79/118 (66%), Gaps = 1/118 (0%)
Query: 51 DLEAFQRHVAAHLADLRGGEDELLSIEWIRRLLEAFLLCQEEFXXXXXXXXXXXXXXXXX 110
+L++FQR VA DL ++LLS+EWI +LL++FL CQEEF
Sbjct: 43 ELDSFQRQVAEKFIDLNASSNDLLSLEWIGKLLDSFLCCQEEFRAIVFNHRSQISKSPM- 101
Query: 111 EKMVGDFYERAVKALDVCNAARDGVDQVRRWERLAGIAASVLLAPGEIHEGQLRRARK 168
++++ D++ER++KALDVCNA RDG++Q+R+WE+LA I S L + I EGQLRRA+K
Sbjct: 102 DRLISDYFERSIKALDVCNAIRDGIEQIRQWEKLADIVISALDSHRPIGEGQLRRAKK 159
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 84/177 (47%), Gaps = 10/177 (5%)
Query: 241 NWSAARQLQAIGSGLAAPRAHE----GGLVAPVYSMGCXXXXXXXXXXXXXPCPDRXXXX 296
+WSA++QLQA+ S LA PR ++ GL PVY+M PC DR
Sbjct: 211 SWSASKQLQALASNLATPRPNDVVASNGLAVPVYTMTSVLLFVMWVLVAAIPCQDRGLQV 270
Query: 297 XXXXXXXXXXXXXXXXXXXXXXXQERLTEEGKRKDRRNSCGLLKEIHALEKCTQRLAEAI 356
+++ EE KR+DR+N CGLLKEI +EK ++ + E I
Sbjct: 271 NFFVPRHFQWAAPVMSL------HDKIVEESKRRDRKNCCGLLKEIDRIEKSSRLMNELI 324
Query: 357 DAAPVPLSGXXXXXXXXXXXXXXXXXXXXXXGLEPLERQVREVFHRIVRSRMEGLDS 413
D+ PL+ GL+P ER+VREVFHRIVRSR E LDS
Sbjct: 325 DSIHFPLNDDKEVEVKQRVDELVQVREALRNGLDPFERKVREVFHRIVRSRTESLDS 381
>AT1G43630.1 | chr1:16436445-16437686 REVERSE LENGTH=414
Length = 413
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 77/121 (63%), Gaps = 4/121 (3%)
Query: 51 DLEAFQRHVAAHLADLRGGEDE--LLSIEWIRRLLEAFLLCQEEFXXXXXXXXXXXXXXX 108
+L++FQR VA DL DE +LS+EWI +LL++FL CQE+F
Sbjct: 67 ELDSFQRQVAEKFIDLNASADEAEILSLEWIGKLLDSFLCCQEDFRVIIFNHKPQLLKQP 126
Query: 109 XXEKMVGDFYERAVKALDVCNAARDGVDQVRRWERLAGIAASVL-LAPGEIHEGQLRRAR 167
++++ +++ER+VKALDVCNA RDG++Q+R+W++L I S L ++ EG++ RA+
Sbjct: 127 M-DRLIEEYFERSVKALDVCNAIRDGIEQIRQWQKLIEIVISALDTNQRQLGEGEIHRAK 185
Query: 168 K 168
K
Sbjct: 186 K 186
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 10/178 (5%)
Query: 241 NWSAARQLQAIGSGLAAPRAHE----GGLVAPVYSMGCXXXXXXXXXXXXXPCPDRXXXX 296
+WSA+RQLQ IG+ LA PRA + GL VY+M PC DR
Sbjct: 233 SWSASRQLQGIGNNLATPRASDVMATNGLALTVYTMTSILLFVTWVLVAAIPCQDRGLHV 292
Query: 297 XXXXXXXXXXXXXXXXXXXXXXXQERLTEEGKRKDRRNSCGLLKEIHALEKCTQRLAEAI 356
+ + E KR ++ CGLL+EI+ +E+ ++ L++ I
Sbjct: 293 HFYFPRHFQWAVPVMSLH-----DKIMDESKKRDKKKKGCGLLREINQIERNSRMLSDLI 347
Query: 357 DAAPVPLSGXXXXXXXXXXXXXXXXX-XXXXXGLEPLERQVREVFHRIVRSRMEGLDS 413
D+ L+ GL+P +R+VR+VFH+IVR+R E LDS
Sbjct: 348 DSDNFSLTDEKCTLEVKERVQELMNVCEAIKEGLDPFDRKVRDVFHQIVRTRTEALDS 405
>AT4G11300.1 | chr4:6872345-6873460 REVERSE LENGTH=372
Length = 371
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 7/123 (5%)
Query: 51 DLEAFQRHVAAHLADLRGGEDE-----LLSIEWIRRLLEAFLLCQEEFXXXXXXXXXXXX 105
+LE FQ+HVA A+L D +LSI+W+R+LL+ F+ + EF
Sbjct: 34 ELEDFQKHVAERFAELLPPSDSPESYPILSIQWLRKLLDVFMSIESEFHSVLTSNPSQIS 93
Query: 106 XXXXXEKMVGDFYERAVKALDVCNAARDGVDQVRRWERLAGIAASVLLAPGEIHEGQLRR 165
+K+V + +R VKALD+C A +GVD VR+ +R A IA + L + +G +RR
Sbjct: 94 KPPL-DKLVPEMLDRIVKALDICTAVVNGVDSVRQIQRCAEIAVTA-LKQTPLSDGSVRR 151
Query: 166 ARK 168
A++
Sbjct: 152 AKR 154
>AT1G63930.1 | chr1:23727927-23729174 FORWARD LENGTH=416
Length = 415
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 72/173 (41%), Gaps = 5/173 (2%)
Query: 241 NWSAARQLQAIGSGLAAPRAHEG-GLVAPVYSMGCXXXXXXXXXXXXXPCPDRXXXXXXX 299
NWSAA+Q+ A+ + L PR +E GL P++ M PC +R
Sbjct: 234 NWSAAKQIHAMTANLTPPRGNEAAGLPQPMFIMSTVMVFVMWVLTAAVPCQERSGLANHL 293
Query: 300 XXXXXXXXXXXXXXXXXXXXQERLTEEGKRKDRRNSCGLLKEIHALEKCTQRLAEAIDAA 359
E++ +E K+K+++ S GL++E+ +EK L E D
Sbjct: 294 PVPPKHLNWAQSLIGI----HEKIGDEWKKKEKKGSAGLMEEMTRMEKLGHSLMEFADGF 349
Query: 360 PVPLSGXXXXXXXXXXXXXXXXXXXXXXGLEPLERQVREVFHRIVRSRMEGLD 412
P L PL++Q+REVFHRIVRSR E L+
Sbjct: 350 HYPAEKDAAESAAVQVAEMAEICRRMEEELVPLQQQIREVFHRIVRSRAEILE 402
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 19/136 (13%)
Query: 51 DLEAFQRHVAAHLADLR-----------------GGEDELLSIEWIRRLLEAFLLCQEEF 93
DLE FQ+H+A +L ++++S+ W+R+L++ FL C+ EF
Sbjct: 33 DLELFQKHIADRFTELLSPPQPPPSDEINTVASVAATEQIMSVTWLRKLMDVFLCCEAEF 92
Query: 94 XXXXXX-XXXXXXXXXXXEKMVGDFYERAVKALDVCNAARDGVDQVRRWERLAGIAASVL 152
+++V + +R++KALD+C A +G+D VR ++RLA IA +
Sbjct: 93 KAILLMGRDPTQISKPPFDRLVPEMLDRSIKALDICTAVVNGIDSVRHYQRLAEIAVTA- 151
Query: 153 LAPGEIHEGQLRRARK 168
L + +G +RRA++
Sbjct: 152 LEQRPLGDGNVRRAKR 167
>AT4G23530.1 | chr4:12279171-12280361 FORWARD LENGTH=397
Length = 396
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 18/133 (13%)
Query: 51 DLEAFQRHVAAHLADL---------------RGGEDELLSIEWIRRLLEAFLLCQEEFXX 95
+LE FQ+HVA +DL D +LSI W++ LL+ F+ C+ EF
Sbjct: 35 ELEYFQKHVAERFSDLITSPSPPPSSSSSAVSQPSDPILSIPWLQNLLDVFMSCEAEFKA 94
Query: 96 XXXXXXXXXXXXXXXEKMVGDFYERAVKALDVCNAARDGVDQVRRWERLAGIAASVLLAP 155
E+++ + +R +KALD+CNA +G+D VR+ R A IA + L
Sbjct: 95 VLSTTQISKSPSL--ERVLPEMLDRILKALDLCNAVVNGIDSVRQSRRFAEIAVTA-LKQ 151
Query: 156 GEIHEGQLRRARK 168
+ +G +RRA++
Sbjct: 152 RPLCDGSVRRAKR 164
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 69/171 (40%), Gaps = 7/171 (4%)
Query: 241 NWSAARQLQAIGSGLAAPRAHEG-GLVAPVYSMGCXXXXXXXXXXXXXPCPDRXXXXXXX 299
NWSA++Q+QA+ + L PR E G PVY M PC
Sbjct: 220 NWSASKQIQAMVANLVLPRGAEASGPAMPVYIMSSVMVLVMWVLVAAVPC-----QTSSV 274
Query: 300 XXXXXXXXXXXXXXXXXXXXQERLTEEGKRKDRR-NSCGLLKEIHALEKCTQRLAEAIDA 358
QER+ EE KRK++R GL++E+ +EK L E +
Sbjct: 275 LVAPLPLPKHQNWASAAMSIQERIGEEIKRKEKRCGGGGLMEEMQRMEKIGLSLMEFAER 334
Query: 359 APVPLSGXXXXXXXXXXXXXXXXXXXXXXGLEPLERQVREVFHRIVRSRME 409
P GLE L+RQVR+VFHR+VRSR+E
Sbjct: 335 FRFPADEEEEVEVAEKVDEMEEICRRMEVGLEDLQRQVRQVFHRLVRSRIE 385
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,505,552
Number of extensions: 108011
Number of successful extensions: 252
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 11
Length of query: 419
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 318
Effective length of database: 8,337,553
Effective search space: 2651341854
Effective search space used: 2651341854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)