BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0162200 Os11g0162200|AK060396
         (69 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15120.2  | chr1:5202648-5203950 FORWARD LENGTH=167            109   3e-25
AT2G01090.1  | chr2:80179-80957 FORWARD LENGTH=63                  96   4e-21

>AT1G15120.2 | chr1:5202648-5203950 FORWARD LENGTH=167
          Length = 166

 Score =  109 bits (273), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 47/64 (73%), Positives = 55/64 (85%)

Query: 1   MADEEPVDPKKYLEERCKPQCVKPLYEYEKCVKRVEKDDTGHKHCTGQYFDYWSCIDKCV 60
           MAD+E VDPKKYLEE CKP+CVKPL EY+ CVKR++ DD+GHKHCTGQYFDYW CIDKC 
Sbjct: 68  MADDEVVDPKKYLEESCKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWQCIDKCF 127

Query: 61  APKL 64
             ++
Sbjct: 128 DTEM 131



>AT2G01090.1 | chr2:80179-80957 FORWARD LENGTH=63
          Length = 62

 Score = 95.9 bits (237), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 41/61 (67%), Positives = 52/61 (85%)

Query: 1  MADEEPVDPKKYLEERCKPQCVKPLYEYEKCVKRVEKDDTGHKHCTGQYFDYWSCIDKCV 60
          M +E+ VD K+Y EE CKP+CVKPL EY+ CVKR++ D++GHKHCTGQYFDYW C+DKCV
Sbjct: 1  MPEEDVVDQKRYFEESCKPKCVKPLLEYQACVKRIQDDESGHKHCTGQYFDYWHCVDKCV 60

Query: 61 A 61
          +
Sbjct: 61 S 61



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.138    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,975,178
Number of extensions: 75485
Number of successful extensions: 159
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 2
Length of query: 69
Length of database: 11,106,569
Length adjustment: 41
Effective length of query: 28
Effective length of database: 9,982,513
Effective search space: 279510364
Effective search space used: 279510364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)