BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0160700 Os11g0160700|AK099442
(951 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G03780.1 | chr5:999266-1000947 REVERSE LENGTH=421 67 3e-11
AT1G01150.1 | chr1:70115-71998 REVERSE LENGTH=346 64 4e-10
AT4G12670.1 | chr4:7472530-7474519 FORWARD LENGTH=500 61 3e-09
AT1G14770.1 | chr1:5086867-5088437 REVERSE LENGTH=430 55 3e-07
>AT5G03780.1 | chr5:999266-1000947 REVERSE LENGTH=421
Length = 420
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 39/61 (63%)
Query: 887 RRTKLCWTEKEEITLREAMAKFTPRDNGPIPWVQILEHGRDVFHRTRLPSDLRVKWRNMK 946
+R +L WT +EE L+ + KF N +PW +ILE G VFH TR P+DL+ KWR+M
Sbjct: 344 QRRRLLWTYEEEEMLKVGVEKFAAEANKNMPWRKILEMGEKVFHETRTPADLKDKWRSMV 403
Query: 947 K 947
K
Sbjct: 404 K 404
>AT1G01150.1 | chr1:70115-71998 REVERSE LENGTH=346
Length = 345
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 37/56 (66%)
Query: 890 KLCWTEKEEITLREAMAKFTPRDNGPIPWVQILEHGRDVFHRTRLPSDLRVKWRNM 945
++ WT EE LRE + KF+ N +PW +ILE G+ +FH TR SDL+ KWRNM
Sbjct: 234 RVLWTVNEEKMLREGVEKFSDTINKNMPWKKILEMGKGIFHTTRNSSDLKDKWRNM 289
>AT4G12670.1 | chr4:7472530-7474519 FORWARD LENGTH=500
Length = 499
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 879 SNPIVPAGRRTKLCWTEKEEITLREAMAKFTPRDNGPIPWVQILEHGRDVFHRTRLPSDL 938
++P A +R + WT E LR + KF N IPW +IL+ GRDVFH R PSDL
Sbjct: 406 NDPAQSATKRKRRFWTLAEVEMLRVGVQKFPGERN--IPWRKILQFGRDVFHDERAPSDL 463
Query: 939 RVKWRNMKK 947
+ KW+ + K
Sbjct: 464 KDKWKTLNK 472
>AT1G14770.1 | chr1:5086867-5088437 REVERSE LENGTH=430
Length = 429
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 579 QDLCIKCGKDGQLLKCS--SCLLAAHDTCFGSLATLDDSGQLYCPVCFYTKATEAYQKAK 636
+++C KC K+G LL CS C H C +D+ G CP+C+Y + Y +++
Sbjct: 345 ENVCWKCEKEGTLLICSRSECAAKVHKECLNCPVNVDEYGNFLCPLCWYDRLAMEYHESQ 404
Query: 637 KTYSEARKNL 646
K S A++ L
Sbjct: 405 KLISCAKRRL 414
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.126 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 20,528,653
Number of extensions: 900056
Number of successful extensions: 2434
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2431
Number of HSP's successfully gapped: 6
Length of query: 951
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 843
Effective length of database: 8,145,641
Effective search space: 6866775363
Effective search space used: 6866775363
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 116 (49.3 bits)