BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0160100 Os11g0160100|AK065597
         (688 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G43770.2  | chr1:16548509-16550257 FORWARD LENGTH=432           98   2e-20
AT5G16680.1  | chr5:5467534-5472956 REVERSE LENGTH=1312            77   3e-14
AT3G02890.1  | chr3:640828-645303 FORWARD LENGTH=995               73   4e-13

>AT1G43770.2 | chr1:16548509-16550257 FORWARD LENGTH=432
          Length = 431

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 79/144 (54%), Gaps = 5/144 (3%)

Query: 438 KYFCVQPIDEPNWTGIMKI-GTNYIP---VGAHFSNKACKKVCELSMSLPQIMKVTELPK 493
           + +  QPI  P W G+M + G N      + AH S+ AC KV E + SL   +    LP+
Sbjct: 281 RNYRAQPIKIPIWRGLMSVKGGNSCTMDGIVAHVSSLACPKVHETASSLKGRLSAEILPR 340

Query: 494 LKAWPKSWEKASVPSAESIGLFFF-SQNTRSNKEFDDLVKHVIDYDIVLETDVSFAKLLV 552
           L+ WPK++ K   P  ES+ LFFF S  +   K FD LV  +   D  +   ++ A+LL+
Sbjct: 341 LEVWPKTFLKNGGPKDESVALFFFPSSESNDEKVFDSLVDKMKKNDSAMRCVLNDAELLL 400

Query: 553 FPSVVLPAEYRVFQGKHYLWGVFK 576
           F S +LP +   F  K+YLWGVFK
Sbjct: 401 FTSYMLPKDSWTFNSKYYLWGVFK 424



>AT5G16680.1 | chr5:5467534-5472956 REVERSE LENGTH=1312
          Length = 1311

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 12/158 (7%)

Query: 434 PFIPKYFCVQ----PIDEPNWTGIMKI------GTNYIPVGAHFSNKACKKVCELSMSLP 483
           P +P    ++    P  E  W G +++         +  + AH S  A  +V E+    P
Sbjct: 818 PLVPSPVMLRSSAIPDHEFIWQGDLEVRKIINQSAMHSGIQAHLSTLASPRVAEVVNKFP 877

Query: 484 QIMKVTELPKLKAWPKSWEKASVPSAESIGLFFFSQNTRS-NKEFDDLVKHVIDYDIVLE 542
           +   + E+P+   WP  +EK     A  I LFFF+++T S  + +  LV ++I  D+ L+
Sbjct: 878 ETFSLNEVPRKSTWPTQFEKLGTKEAH-IALFFFAKDTESYERNYKPLVDNMIKNDLALK 936

Query: 543 TDVSFAKLLVFPSVVLPAEYRVFQGKHYLWGVFKRSKD 580
            ++    LL+F S  LP+  + +   ++LWGVF+  K+
Sbjct: 937 GNLDNVDLLIFASNQLPSNCQRWNMLYFLWGVFQGRKE 974



>AT3G02890.1 | chr3:640828-645303 FORWARD LENGTH=995
          Length = 994

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 81/158 (51%), Gaps = 15/158 (9%)

Query: 430 LSSTPFIPKYFCVQPIDEPNWTGIMKIGTN------YIPVGAHFSNKACKKVCELSMSLP 483
           LS+T  IPK   +       W G +++  +      +  + A+ S  A  KV E+    P
Sbjct: 688 LSTTSAIPKPEYI-------WQGDLEVQKSRNLSAMHSGIQAYLSTLASPKVVEVVKQFP 740

Query: 484 QIMKVTELPKLKAWPKSWEKASVPSAESIGLFFFSQNTRS-NKEFDDLVKHVIDYDIVLE 542
           + + + E+P+L +WP  ++       + + LFFF+++  S  K +  LV ++I  D+ L+
Sbjct: 741 EKVTLNEVPRLSSWPAQFQDTGA-KEQHVALFFFAKDIESYEKNYKPLVDNMIQKDLALK 799

Query: 543 TDVSFAKLLVFPSVVLPAEYRVFQGKHYLWGVFKRSKD 580
            ++   +LL+F S  LP + + +    +LWGVF+  K+
Sbjct: 800 GNLEGVELLIFASNQLPQDCQRWNMLFFLWGVFRGKKE 837



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.131    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 16,145,572
Number of extensions: 729240
Number of successful extensions: 1996
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1997
Number of HSP's successfully gapped: 6
Length of query: 688
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 583
Effective length of database: 8,227,889
Effective search space: 4796859287
Effective search space used: 4796859287
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 115 (48.9 bits)