BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0159000 Os11g0159000|AK065738
(252 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G15900.1 | chr2:6927390-6932535 FORWARD LENGTH=995 316 6e-87
AT1G15240.2 | chr1:5243799-5248604 FORWARD LENGTH=1021 157 5e-39
>AT2G15900.1 | chr2:6927390-6932535 FORWARD LENGTH=995
Length = 994
Score = 316 bits (810), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 150/247 (60%), Positives = 188/247 (76%)
Query: 3 RAMMGVDDLIEEAKVRTVWWALCVFAISYFLTHTSKSMWTNVPMSILILAFLRYLSFKVE 62
+AM + DLIEEAKVR VWW LC+F+++YFLTHTS W N+P++ILI R+ E
Sbjct: 2 KAMETIQDLIEEAKVRAVWWCLCIFSVTYFLTHTSIYWWLNLPIAILICGGARFFFNHFE 61
Query: 63 FHWRGQPVQKQTHLSQLSKRQLSAHDHRLSTVAPVSRWRRKVGSPSVEAAFESFIENILR 122
F W+ +Q+ LS L K+QLS +D RLS + P RW++K+ SP VEAA FI+ IL
Sbjct: 62 FRWKVPATPRQSQLSYLEKKQLSVNDPRLSGIPPPPRWKKKIDSPVVEAAINDFIDKILN 121
Query: 123 DFVVDLWYSSITPDREAPELIRGLILHALGEISGRVKEMNLVDLLTRDMADLIGHHLDIF 182
DFVV+LWYS ITPD+EAPELIR +I+ ALGEIS RVKE+N+VDLLTRD+ DLIG HL+ F
Sbjct: 122 DFVVNLWYSLITPDKEAPELIRAVIMDALGEISVRVKEINIVDLLTRDIVDLIGDHLESF 181
Query: 183 RKNQSQIGVDVMGTLSSEERDERLKQHLIVSQELHPALLSSEHEYKVFQDIVGGIMALVL 242
R+NQ+ IG DVM TLSSEERDERLK HL+ S EL+PAL+S E EYKV Q IV GI+++VL
Sbjct: 182 RRNQAAIGTDVMKTLSSEERDERLKYHLMASGELYPALVSPESEYKVLQKIVAGILSVVL 241
Query: 243 RPQDAQI 249
RP++AQ
Sbjct: 242 RPREAQC 248
>AT1G15240.2 | chr1:5243799-5248604 FORWARD LENGTH=1021
Length = 1020
Score = 157 bits (397), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 90/250 (36%), Positives = 146/250 (58%), Gaps = 2/250 (0%)
Query: 2 RRAMMGVDDLIEEAKVRTVWWALCVFAISYFLTHTSKSMWTNVPMSILILAFLRYLSFKV 61
++ ++ + DL++EAK R V +CV +SY ++ TS S+ N+ ++L++ RY +
Sbjct: 4 QKQVVTIRDLVDEAKKRIVIVVICVVGLSYLMSLTSSSVLVNLTPAVLLIILFRYYTLDS 63
Query: 62 EFHWRGQPVQKQTHLSQLSKRQLSAHDHRLSTVAPVSRWRRKVGSPSVEAAFESFIENIL 121
E + + S L+ L+ L AP S WR KV S VE A + F +++
Sbjct: 64 EMKRKAAAYTNKPS-SSLNAPTLNKTPE-LPKAAPRSDWRSKVNSQVVEDAIDHFTRHLI 121
Query: 122 RDFVVDLWYSSITPDREAPELIRGLILHALGEISGRVKEMNLVDLLTRDMADLIGHHLDI 181
++V+DLWYS ITPD++ PE + +I LGE+S R + +NL+DLLTRD+ D+I +++
Sbjct: 122 SEWVLDLWYSRITPDKQGPEELVFIINDVLGELSRRFRNVNLIDLLTRDLIDIICRRVEL 181
Query: 182 FRKNQSQIGVDVMGTLSSEERDERLKQHLIVSQELHPALLSSEHEYKVFQDIVGGIMALV 241
FR+ Q++I +LS E+RD L++ + +LHPAL S E E+KV Q IV ++ +
Sbjct: 182 FRECQAKIERQQRRSLSFEDRDSELRRVMASEDKLHPALFSPESEHKVLQHIVNSLILVT 241
Query: 242 LRPQDAQIWF 251
RP+D F
Sbjct: 242 FRPEDLHCAF 251
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,187,391
Number of extensions: 201446
Number of successful extensions: 709
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 708
Number of HSP's successfully gapped: 2
Length of query: 252
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 156
Effective length of database: 8,474,633
Effective search space: 1322042748
Effective search space used: 1322042748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)