BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0156800 Os11g0156800|AK107423
(467 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G52490.1 | chr3:19455850-19458721 REVERSE LENGTH=816 158 7e-39
AT5G57710.1 | chr5:23384794-23388052 FORWARD LENGTH=991 64 2e-10
AT4G30350.1 | chr4:14848031-14850973 FORWARD LENGTH=925 60 4e-09
AT2G40130.2 | chr2:16766030-16769074 FORWARD LENGTH=911 56 4e-08
AT1G07200.2 | chr1:2209033-2212316 REVERSE LENGTH=980 51 2e-06
>AT3G52490.1 | chr3:19455850-19458721 REVERSE LENGTH=816
Length = 815
Score = 158 bits (399), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 92/198 (46%), Positives = 125/198 (63%), Gaps = 6/198 (3%)
Query: 200 KFIELNAENLKILCNALESRVPQHSNIVPDIASTVLQCRSGMKKMKLRHKEIIKASSTTW 259
+F E+NAENL LC ALES+VP ++VP++A TVL+CRSG K+ E K TW
Sbjct: 565 RFKEMNAENLATLCAALESKVPWQKDLVPELAKTVLKCRSGSSTRKINGNEDKKED--TW 622
Query: 260 LLFQGRDVDGKKAMAQELAKLVFGSSTEFSSISFDELTSPYSDSSSGELTLKRQRSADSN 319
+ FQG DVD K+ +A+ELAKLVFGS F SI +S SDS+ L+ +R D
Sbjct: 623 MFFQGLDVDAKEKIARELAKLVFGSQDSFVSICLSSFSSTRSDSAED---LRNKRLRDEQ 679
Query: 320 EHSFAQRLCEIVSKNPHQVIVINDIEQLDQDSEISIKKAIANGRMRGCTGEEVDFEDAII 379
S+ +R E VS +P++VI++ DIEQ D S++ K+A+ GR+ +GEE +DAI+
Sbjct: 680 SLSYIERFSEAVSLDPNRVILVEDIEQADYLSQVGFKRAVERGRVCNSSGEEASLKDAIV 739
Query: 380 VLSYEEEFDSRSRASSSP 397
+LS E F SRSRA S P
Sbjct: 740 ILSC-ERFRSRSRACSPP 756
>AT5G57710.1 | chr5:23384794-23388052 FORWARD LENGTH=991
Length = 990
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 19/184 (10%)
Query: 204 LNAENLKILCNALESRVPQHSNIVPDIASTVLQCRSGMKKMKLRHKEIIKASSTTWLLFQ 263
L+ + K L + +V ++ +A+TV QC+ G K + + + WLLF
Sbjct: 604 LDIDLFKKLLKGMTEKVWWQNDAAAAVAATVSQCKLGNGK-----RRGVLSKGDVWLLFS 658
Query: 264 GRDVDGKKAMAQELAKLVFGSSTEFSSISFDELTSPYSDSSSGELTLKRQRSADSNEHSF 323
G D GK+ M L+ LV+G++ + + D+ G + + + + D
Sbjct: 659 GPDRVGKRKMVSALSSLVYGTNPIMIQLGSRQ------DAGDGNSSFRGKTALD------ 706
Query: 324 AQRLCEIVSKNPHQVIVINDIEQLDQDSEISIKKAIANGRMRGCTGEEVDFEDAIIVLSY 383
++ E V ++P VI++ DI++ D SIK+A+ GR+R G E+ + I V++
Sbjct: 707 --KIAETVKRSPFSVILLEDIDEADMLVRGSIKQAMDRGRIRDSHGREISLGNVIFVMTA 764
Query: 384 EEEF 387
F
Sbjct: 765 SWHF 768
>AT4G30350.1 | chr4:14848031-14850973 FORWARD LENGTH=925
Length = 924
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 86/205 (41%), Gaps = 29/205 (14%)
Query: 195 ETRRPKFIEL----NAENLKILCNALESRVPQHSNIVPDIASTVLQCRSGMKKMKLRHKE 250
+TR +F +L + + K L L V + +A+ + +C+ G K K
Sbjct: 552 KTREARFGKLGDSFDIDLFKKLLKGLAKSVWWQHDAASSVAAAITECKHGNGKSK----- 606
Query: 251 IIKASSTTWLLFQGRDVDGKKAMAQELAKLVFGSSTEFSSISFDELTSPYSDSSSGELTL 310
WL+F G D GK MA L+ LV GS I+ +S D L +
Sbjct: 607 -----GDIWLMFTGPDRAGKSKMASALSDLVSGSQP----ITISLGSSSRMDDG---LNI 654
Query: 311 KRQRSADSNEHSFAQRLCEIVSKNPHQVIVINDIEQLDQDSEISIKKAIANGRMRGCTGE 370
+ + + D R E V +NP VIV+ DI++ D ++K AI GR+ G
Sbjct: 655 RGKTALD--------RFAEAVRRNPFAVIVLEDIDEADILLRNNVKIAIERGRICDSYGR 706
Query: 371 EVDFEDAIIVLSYEEEFDSRSRASS 395
EV + II+L+ S +S
Sbjct: 707 EVSLGNVIIILTANSSLGSAKNVAS 731
>AT2G40130.2 | chr2:16766030-16769074 FORWARD LENGTH=911
Length = 910
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 21/180 (11%)
Query: 203 ELNAENLKILCNALESRVPQHSNIVPDIASTVLQCRSGMKKMKLRHKEIIKASSTTWLLF 262
+LNAE+ KI+ L V D A+ V+ C + +++ WL
Sbjct: 531 DLNAESFKIIYRRLTDMVSGQ-----DEAARVISCALSQPPKSVTRRDV-------WLNL 578
Query: 263 QGRDVDGKKAMAQELAKLVFGSSTEFSSISFDELTSPYSDSSSGELTLKRQRSADSNEHS 322
G D GK+ M+ LA++V+ S F ++ G R R +H
Sbjct: 579 VGPDTVGKRRMSLVLAEIVYQSEHRFMAVDL----GAAEQGMGGCDDPMRLRGKTMVDHI 634
Query: 323 FAQRLCEIVSKNPHQVIVINDIEQLDQDSEISIKKAIANGRMRGCTGEEVDFEDAIIVLS 382
F E++ +NP V+ + +IE+ D+ ++S+ KAI G+ G EV + I V++
Sbjct: 635 F-----EVMCRNPFCVVFLENIEKADEKLQMSLSKAIETGKFMDSHGREVGIGNTIFVMT 689
>AT1G07200.2 | chr1:2209033-2212316 REVERSE LENGTH=980
Length = 979
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/192 (18%), Positives = 81/192 (42%), Gaps = 29/192 (15%)
Query: 198 RPKFIELNA-------ENLKILCNALESRVPQHSNIVPDIASTVLQCRSGMKKMKLRHKE 250
+P + LN+ ++ K L L +V + V I+ + C++ +
Sbjct: 600 KPMLVTLNSSLEHTYQKDFKSLREILSRKVAWQTEAVNAISQIICGCKTDSTRRN----- 654
Query: 251 IIKASSTTWLLFQGRDVDGKKAMAQELAKLVFGSSTEFSSISFDELTSPYSDSSSGELTL 310
+S WL G D GKK +A L+++ FG + + F D G+
Sbjct: 655 ---QASGIWLALLGPDKVGKKKVAMTLSEVFFGGKVNYICVDFGAEHCSLDDKFRGK--- 708
Query: 311 KRQRSADSNEHSFAQRLCEIVSKNPHQVIVINDIEQLDQDSEISIKKAIANGRMRGCTGE 370
+ + +S+ PH V+++ ++E+ + ++ + +A++ G++R G
Sbjct: 709 -----------TVVDYVTGELSRKPHSVVLLENVEKAEFPDQMRLSEAVSTGKIRDLHGR 757
Query: 371 EVDFEDAIIVLS 382
+ ++ I+V++
Sbjct: 758 VISMKNVIVVVT 769
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.130 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,873,653
Number of extensions: 325570
Number of successful extensions: 1148
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1145
Number of HSP's successfully gapped: 5
Length of query: 467
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 365
Effective length of database: 8,310,137
Effective search space: 3033200005
Effective search space used: 3033200005
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)