BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0155100 Os11g0155100|AK108413
         (318 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G36090.1  | chr2:15158631-15159584 FORWARD LENGTH=318          119   2e-27
AT3G44326.1  | chr3:16000933-16002024 REVERSE LENGTH=364          102   3e-22
AT2G27310.1  | chr2:11683954-11684967 REVERSE LENGTH=338           97   1e-20

>AT2G36090.1 | chr2:15158631-15159584 FORWARD LENGTH=318
          Length = 317

 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 109/237 (45%), Gaps = 31/237 (13%)

Query: 13  VGTVIEDLPTDVLALVLRRLDGASLAAVGCACSSFRELAVDQETWRGLCLALWPSVRDVL 72
           + TV +D+   + + +L RLDGA+LA+V CA S    LA ++  W  +C + WPS     
Sbjct: 17  ISTVHDDI---IESHILTRLDGATLASVSCASSHLHHLASNEILWSKICRSTWPSC---- 69

Query: 73  XXXXXXXXXXYRXXXXXXXXXXXXXXXXXXXXXXXVPGSLPSRLVSAVDLHHGGVCIMSR 132
                                              +    P  L+SAVDLH+ G  I SR
Sbjct: 70  ------------SGGSRSFFSDAYSMVETAGTVSDLDRPFP-ELISAVDLHYRGKLIFSR 116

Query: 133 VVETDTSSAWFLGSPFRVDALVQEGFXXXXXXXXXXX-----------XXXWILIDPASG 181
           VV+T+T++AWF  SP R+D +  +                           WI+IDP   
Sbjct: 117 VVKTETTTAWFKSSPLRIDLVDTKDTVATPIKRRQRTEDTCRDLEKDLTLSWIVIDPIGK 176

Query: 182 RAMNASSRRPVAVDRKWLTGETVARFTVMLGGGVALDAAVTCDDRYGHVREVSLCVE 238
           RA N SS RPV+V R W++GE  A+F  ++G    +   VTC +   HVREVSL VE
Sbjct: 177 RAANISSHRPVSVQRNWISGEVEAQFATVVGAVECVITVVTCGEEEMHVREVSLKVE 233



>AT3G44326.1 | chr3:16000933-16002024 REVERSE LENGTH=364
          Length = 363

 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 97/223 (43%), Gaps = 22/223 (9%)

Query: 4   LRAPACGGGVGTVIEDLPTDVL-ALVLRRLDGASLAAVGCACSSFRELAVDQETWRGLCL 62
           +  P+ GG  G  I  + +DVL + +L RLDG+SLAA+ C CS+      D+  WR  C 
Sbjct: 10  VEQPSRGGSPG--INAVSSDVLRSNILTRLDGSSLAALSCTCSNLNSFCSDESLWRQQCS 67

Query: 63  ALWPSVRDV-LXXXXXXXXXXYRXXXXXXXXXXXXXXXXXXXXXXXVPGSLPSRLVSAVD 121
           A WPS  D  +          +R                        P    S L+SAVD
Sbjct: 68  ATWPSTSDTRVQSIISTFPDGHRTFFSDSFPFLEHDVGINLP-----PSVDTSELISAVD 122

Query: 122 LHHGGVCIMSRVVETDTSSAWFLGSPFRVDALVQEGFXXX-------------XXXXXXX 168
           + +    I SRV  T+T S WFL SP RVD +  +                         
Sbjct: 123 IFYKDDVIFSRVHVTETVSGWFLCSPMRVDLVEPKELIPTRVLVTDQCKDDTWKSDLEEN 182

Query: 169 XXXXWILIDPASGRAMNASSRRPVAVDRKWLTGETVARFTVML 211
               WILIDP   RA + S+R+PV+V R WLTGE   +F+ + 
Sbjct: 183 LSLSWILIDPTCKRAADVSTRKPVSVHRHWLTGEVHVKFSSIF 225



>AT2G27310.1 | chr2:11683954-11684967 REVERSE LENGTH=338
          Length = 337

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 109/256 (42%), Gaps = 37/256 (14%)

Query: 14  GTVIEDLPTDVLAL-VLRRLDGASLAAVGCACSSFRELAVDQETWRGLCLALWPSVRDV- 71
           G  I  L +D++   +L RLDG +LA+     S  + L  +++ W+ L +  WPS+ D  
Sbjct: 9   GDSISTLHSDIIQTQILTRLDGPTLASTATTSSYLQTLCTEEKLWQELSIDTWPSINDPR 68

Query: 72  LXXXXXXXXXXYRXXXXXXXXXXXXXXXXXXXXXXXVPGSLPSRLVSAVDLHHGGVCIMS 131
           +          YR                            P+ L+SAVDL++ G  I S
Sbjct: 69  VVQAISSFPSGYRSFFADSYPFTEHTWQSE-------KHDPPTGLISAVDLYYRGEIIYS 121

Query: 132 RVVETDT---SSAWFLGSPFRVDAL-----VQE-------GFXXXXXXXXXXXXXXWILI 176
           +V E +T    S WFL SPFRVD L     VQ         +              WILI
Sbjct: 122 KVQEMETEKGKSGWFLSSPFRVDILDPKESVQTRIRYPGGDYEAWVKDMEESMKLNWILI 181

Query: 177 DPASGRAMNASSRRPVAVDRKWLTGETVARFTVMLGGGV----------ALDAAVTCDDR 226
           DP   RA N SSR+ V+  R WLTG+   RF+ ++              + +A    D+ 
Sbjct: 182 DPIKKRAANISSRKAVSARRNWLTGDLEIRFSTVVTAEAAEVAAVVSCGSAEAWKEVDEE 241

Query: 227 YG---HVREVSLCVED 239
            G   HVR+V L VED
Sbjct: 242 VGGEIHVRDVRLQVED 257



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,506,494
Number of extensions: 126138
Number of successful extensions: 427
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 5
Length of query: 318
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 219
Effective length of database: 8,392,385
Effective search space: 1837932315
Effective search space used: 1837932315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 112 (47.8 bits)