BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0154300 Os11g0154300|AK072969
(171 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G15040.1 | chr3:5065445-5066176 REVERSE LENGTH=244 71 3e-13
AT4G21970.1 | chr4:11653633-11654106 FORWARD LENGTH=158 64 5e-11
AT3G45210.1 | chr3:16557482-16557928 REVERSE LENGTH=149 62 1e-10
AT4G04630.1 | chr4:2332163-2332669 REVERSE LENGTH=169 62 2e-10
AT2G34340.1 | chr2:14489032-14489442 REVERSE LENGTH=137 61 3e-10
AT1G29640.1 | chr1:10355959-10356381 REVERSE LENGTH=141 59 1e-09
AT5G60680.1 | chr5:24386247-24386738 FORWARD LENGTH=164 58 3e-09
AT4G21930.1 | chr4:11639893-11640444 FORWARD LENGTH=184 55 1e-08
AT5G03230.1 | chr5:769636-770136 FORWARD LENGTH=167 55 2e-08
AT2G28400.1 | chr2:12148513-12149001 REVERSE LENGTH=163 55 2e-08
AT1G11700.1 | chr1:3945852-3946457 FORWARD LENGTH=202 54 6e-08
AT1G61930.1 | chr1:22893218-22893829 FORWARD LENGTH=204 51 3e-07
AT4G26950.1 | chr4:13533643-13534077 REVERSE LENGTH=145 49 1e-06
>AT3G15040.1 | chr3:5065445-5066176 REVERSE LENGTH=244
Length = 243
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 40/50 (80%), Gaps = 4/50 (8%)
Query: 126 MVPPHEIVARRAAAHS----SVLEGSGRTLKGRDLHRVRNAVLRRTGFLD 171
M+PPHEIVAR A S SVLEG+GRTLKGRDL +VRNAV RRTGF+D
Sbjct: 194 MLPPHEIVARSLAQSSLLSCSVLEGAGRTLKGRDLRQVRNAVFRRTGFID 243
>AT4G21970.1 | chr4:11653633-11654106 FORWARD LENGTH=158
Length = 157
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 38/50 (76%), Gaps = 4/50 (8%)
Query: 126 MVPPHEIVARRAA----AHSSVLEGSGRTLKGRDLHRVRNAVLRRTGFLD 171
MVPPHE+VA+R A + S+ EG GRTLKGRDL + RNAVL RTGFL+
Sbjct: 96 MVPPHELVAKRLARTQISSFSMCEGIGRTLKGRDLSKTRNAVLTRTGFLE 145
>AT3G45210.1 | chr3:16557482-16557928 REVERSE LENGTH=149
Length = 148
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 35/45 (77%)
Query: 127 VPPHEIVARRAAAHSSVLEGSGRTLKGRDLHRVRNAVLRRTGFLD 171
+PPHE +A+ A SV EG GRTLKGRD+ RVRNA+L +TGFLD
Sbjct: 104 LPPHEYLAKTRMASFSVHEGIGRTLKGRDMSRVRNAILEKTGFLD 148
>AT4G04630.1 | chr4:2332163-2332669 REVERSE LENGTH=169
Length = 168
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 38/50 (76%), Gaps = 4/50 (8%)
Query: 126 MVPPHEIVARRAA----AHSSVLEGSGRTLKGRDLHRVRNAVLRRTGFLD 171
MVPPHE VAR+ A + S+ EG GRTLKGRDL +VRNAVL +TGFL+
Sbjct: 119 MVPPHEWVARKLARTQISSFSMCEGVGRTLKGRDLSKVRNAVLSKTGFLE 168
>AT2G34340.1 | chr2:14489032-14489442 REVERSE LENGTH=137
Length = 136
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 35/49 (71%), Gaps = 3/49 (6%)
Query: 126 MVPPHEIVARRAAAHS---SVLEGSGRTLKGRDLHRVRNAVLRRTGFLD 171
M+PPH ++ RR SV GSGRTLKGRDL RVRN+VLR TGFL+
Sbjct: 87 MIPPHIMIGRRIQGGQMAFSVCSGSGRTLKGRDLSRVRNSVLRLTGFLE 135
>AT1G29640.1 | chr1:10355959-10356381 REVERSE LENGTH=141
Length = 140
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 35/49 (71%), Gaps = 3/49 (6%)
Query: 126 MVPPHEIVARRAAAHS---SVLEGSGRTLKGRDLHRVRNAVLRRTGFLD 171
M+PPH IV RR SV G+GRTLKGRDL RVRN+VL+ TGFL+
Sbjct: 91 MIPPHLIVGRRMEGGQMAFSVCTGNGRTLKGRDLSRVRNSVLKLTGFLE 139
>AT5G60680.1 | chr5:24386247-24386738 FORWARD LENGTH=164
Length = 163
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 32/45 (71%)
Query: 127 VPPHEIVARRAAAHSSVLEGSGRTLKGRDLHRVRNAVLRRTGFLD 171
+PPHE +A+ A SV EG GRTLKGRDL RVRNA+ + GF D
Sbjct: 119 LPPHEFLAKTRMASFSVHEGVGRTLKGRDLSRVRNAIFEKFGFQD 163
>AT4G21930.1 | chr4:11639893-11640444 FORWARD LENGTH=184
Length = 183
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 126 MVPPHEIVA---RRAAAHSSVLEGSGRTLKGRDLHRVRNAVLRRTGFL 170
MVPPHE VA R SSV G GRTLKGRD+ RVR+AV +TGF
Sbjct: 135 MVPPHEYVAARSRNGDGGSSVFLGVGRTLKGRDMRRVRDAVWSQTGFY 182
>AT5G03230.1 | chr5:769636-770136 FORWARD LENGTH=167
Length = 166
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 126 MVPPHEIVARRAAAHSSVLEGSGRTLKGRDLHRVRNAVLRRTGFLD 171
M+PPHE +ARR + +V EG G T KGRDL R+RNA+ + GF D
Sbjct: 121 MIPPHEYLARRRGSSFTVHEGIGGTAKGRDLRRLRNAIWEKIGFQD 166
>AT2G28400.1 | chr2:12148513-12149001 REVERSE LENGTH=163
Length = 162
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 32/45 (71%)
Query: 127 VPPHEIVARRAAAHSSVLEGSGRTLKGRDLHRVRNAVLRRTGFLD 171
VPPHE++A R A SV EG+GRTLKGRDL RVRN + + G D
Sbjct: 118 VPPHELLANRRMASFSVHEGAGRTLKGRDLSRVRNTIFKIRGIED 162
>AT1G11700.1 | chr1:3945852-3946457 FORWARD LENGTH=202
Length = 201
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 7/52 (13%)
Query: 126 MVPPHEIVA-------RRAAAHSSVLEGSGRTLKGRDLHRVRNAVLRRTGFL 170
M+PPHE +A R++ SV EG GRTLKGR+L RVR+A+ +TGF
Sbjct: 149 MMPPHEYLAKSQQRRSRKSGGGGSVFEGVGRTLKGRELRRVRDAIWSQTGFY 200
>AT1G61930.1 | chr1:22893218-22893829 FORWARD LENGTH=204
Length = 203
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 8/53 (15%)
Query: 126 MVPPHEIVARRAAAHS--------SVLEGSGRTLKGRDLHRVRNAVLRRTGFL 170
M+PPHE +A+ A S SV +G GRTLKGR+L RVR+A+ +TGF
Sbjct: 150 MMPPHEYLAKSQARRSRKIGGGGASVFDGVGRTLKGRELRRVRDAIWSQTGFY 202
>AT4G26950.1 | chr4:13533643-13534077 REVERSE LENGTH=145
Length = 144
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 26/29 (89%)
Query: 143 VLEGSGRTLKGRDLHRVRNAVLRRTGFLD 171
V+EG GR LKGRDL +VRNA+L++TGFL+
Sbjct: 116 VMEGVGRKLKGRDLSKVRNAILKQTGFLE 144
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.138 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,328,297
Number of extensions: 53207
Number of successful extensions: 89
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 13
Length of query: 171
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 80
Effective length of database: 8,611,713
Effective search space: 688937040
Effective search space used: 688937040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)