BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0151800 Os11g0151800|J075119H10
(112 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G20500.1 | chr3:7157926-7160244 FORWARD LENGTH=438 64 2e-11
AT3G52780.1 | chr3:19561525-19564195 REVERSE LENGTH=428 62 6e-11
AT3G52820.1 | chr3:19574236-19576938 REVERSE LENGTH=435 50 2e-07
AT1G52940.1 | chr1:19716402-19723716 FORWARD LENGTH=397 50 2e-07
AT2G18130.1 | chr2:7879308-7883935 REVERSE LENGTH=442 50 2e-07
AT2G27190.1 | chr2:11621400-11623438 REVERSE LENGTH=470 46 3e-06
AT1G56360.1 | chr1:21098603-21100842 REVERSE LENGTH=467 46 5e-06
AT3G46120.1 | chr3:16935921-16939766 REVERSE LENGTH=389 46 5e-06
AT4G36350.1 | chr4:17173737-17175857 REVERSE LENGTH=467 45 5e-06
AT3G52810.1 | chr3:19571089-19573640 REVERSE LENGTH=438 45 7e-06
AT3G07130.1 | chr3:2255763-2257981 REVERSE LENGTH=533 45 7e-06
>AT3G20500.1 | chr3:7157926-7160244 FORWARD LENGTH=438
Length = 437
Score = 63.5 bits (153), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/45 (62%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 68 FGHGRLEVVNATHALWTWHRNDDDEAVVADQAWITSLASNPACNK 112
FGHG L++VN+THALWTWHRNDDDE +D+ W+ SL N C K
Sbjct: 381 FGHGELQMVNSTHALWTWHRNDDDEPTRSDEVWLNSLV-NSGCLK 424
>AT3G52780.1 | chr3:19561525-19564195 REVERSE LENGTH=428
Length = 427
Score = 62.0 bits (149), Expect = 6e-11, Method: Composition-based stats.
Identities = 26/43 (60%), Positives = 32/43 (74%)
Query: 68 FGHGRLEVVNATHALWTWHRNDDDEAVVADQAWITSLASNPAC 110
FGHG+L V NATHA W WHRNDDD +V D W+TSL ++ +C
Sbjct: 383 FGHGQLVVENATHARWEWHRNDDDVSVEKDSVWLTSLLADSSC 425
>AT3G52820.1 | chr3:19574236-19576938 REVERSE LENGTH=435
Length = 434
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 29/37 (78%)
Query: 68 FGHGRLEVVNATHALWTWHRNDDDEAVVADQAWITSL 104
FGHGRL+V++ A W+WHRN+D +++AD+ W+ SL
Sbjct: 382 FGHGRLKVMDGKRAHWSWHRNNDSNSLLADEVWLDSL 418
>AT1G52940.1 | chr1:19716402-19723716 FORWARD LENGTH=397
Length = 396
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/34 (61%), Positives = 26/34 (76%)
Query: 68 FGHGRLEVVNATHALWTWHRNDDDEAVVADQAWI 101
FGH LE+ N THA +TWHRN +DEAV+AD W+
Sbjct: 351 FGHALLEIKNRTHAHYTWHRNKEDEAVIADSIWL 384
>AT2G18130.1 | chr2:7879308-7883935 REVERSE LENGTH=442
Length = 441
Score = 50.1 bits (118), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/34 (61%), Positives = 26/34 (76%)
Query: 68 FGHGRLEVVNATHALWTWHRNDDDEAVVADQAWI 101
FGH LE+ N THA +TWHRN +DEAV+AD W+
Sbjct: 396 FGHALLEIKNRTHAHYTWHRNKEDEAVIADSIWL 429
>AT2G27190.1 | chr2:11621400-11623438 REVERSE LENGTH=470
Length = 469
Score = 46.2 bits (108), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 68 FGHGRLEVVNATHALWTWHRNDDDEAVVADQAWI 101
FGHG LE+ N THA ++W+RN D AV AD W+
Sbjct: 420 FGHGLLEIKNRTHAYFSWNRNQDGNAVAADSVWL 453
>AT1G56360.1 | chr1:21098603-21100842 REVERSE LENGTH=467
Length = 466
Score = 45.8 bits (107), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/30 (63%), Positives = 23/30 (76%)
Query: 68 FGHGRLEVVNATHALWTWHRNDDDEAVVAD 97
FGH LE++N THA +TWHRN D+E V AD
Sbjct: 415 FGHAVLEIMNRTHAQYTWHRNQDNEPVAAD 444
>AT3G46120.1 | chr3:16935921-16939766 REVERSE LENGTH=389
Length = 388
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 4/38 (10%)
Query: 68 FGHGRLEVVNATHALWTWHRNDDD----EAVVADQAWI 101
FGH LE+ N THA +TWHRN +D EAV+AD W+
Sbjct: 339 FGHAILEIKNRTHAHYTWHRNKEDEFIPEAVIADSIWL 376
>AT4G36350.1 | chr4:17173737-17175857 REVERSE LENGTH=467
Length = 466
Score = 45.4 bits (106), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 68 FGHGRLEVVNATHALWTWHRNDDDEAVVAD 97
FGH LE+ N THA +TWHRN D+E V AD
Sbjct: 415 FGHAVLEIYNRTHAYYTWHRNQDNEPVAAD 444
>AT3G52810.1 | chr3:19571089-19573640 REVERSE LENGTH=438
Length = 437
Score = 45.1 bits (105), Expect = 7e-06, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 68 FGHGRLEVVNATHALWTWHRNDDDEAVVADQAWITSLASNPACN 111
FGHGRL +++ A W+WHRN+D+ + +AD+ S ++ C+
Sbjct: 386 FGHGRLRIIDHKRAHWSWHRNNDEMSSIADEVSFESPRTSSHCH 429
>AT3G07130.1 | chr3:2255763-2257981 REVERSE LENGTH=533
Length = 532
Score = 45.1 bits (105), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 68 FGHGRLEVVNATHALWTWHRNDDDEAVVADQAWI 101
FGHG LE+ N T ALWTW+RN D + V DQ +I
Sbjct: 482 FGHGILEMKNETWALWTWYRNQDSSSEVGDQIYI 515
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.129 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,464,440
Number of extensions: 30112
Number of successful extensions: 77
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 11
Length of query: 112
Length of database: 11,106,569
Length adjustment: 81
Effective length of query: 31
Effective length of database: 8,885,873
Effective search space: 275462063
Effective search space used: 275462063
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)