BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0151100 Os11g0151100|Os11g0151100
(401 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G19430.1 | chr3:6736382-6738330 REVERSE LENGTH=560 159 3e-39
AT5G60520.1 | chr5:24331787-24332947 REVERSE LENGTH=339 124 6e-29
AT5G54370.1 | chr5:22075334-22076567 FORWARD LENGTH=338 117 2e-26
AT5G60530.1 | chr5:24334197-24335685 REVERSE LENGTH=440 110 1e-24
AT4G27400.1 | chr4:13705341-13706637 FORWARD LENGTH=342 108 5e-24
AT1G54890.1 | chr1:20463107-20464407 FORWARD LENGTH=348 100 2e-21
>AT3G19430.1 | chr3:6736382-6738330 REVERSE LENGTH=560
Length = 559
Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 78/126 (61%), Positives = 92/126 (73%), Gaps = 5/126 (3%)
Query: 79 RKLYPYCSAKMMECPDTCPTSCFVDCDACKPVCVCNVPGA-CGDPRFIGGDGNAFYFHGR 137
+K C CP CP SC VDC CKPVC C+ PG+ C DPRFIGGDG FYFHG+
Sbjct: 266 KKQRSPCYGVEYTCPADCPRSCQVDCVTCKPVCNCDKPGSVCQDPRFIGGDGLTFYFHGK 325
Query: 138 RDADFCVVSDRDLHINAHFIGKRGADGMSRDFTWIQAIAVLFDDGGAHRLYVGARKTAAW 197
+D++FC++SD +LHINAHFIGKR A GM+RDFTW+Q+IA+LF G HRLYVGA KTA W
Sbjct: 326 KDSNFCLISDPNLHINAHFIGKRRA-GMARDFTWVQSIAILF---GTHRLYVGALKTATW 381
Query: 198 DDDERR 203
DD R
Sbjct: 382 DDSVDR 387
>AT5G60520.1 | chr5:24331787-24332947 REVERSE LENGTH=339
Length = 338
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 84/132 (63%), Gaps = 21/132 (15%)
Query: 85 CSAKMMECPDTCP----------TSCFVDCDA-CKPVCV-----CNVPGA-CGDPRFIGG 127
C+ K++ CP CP +CF+DC + C+ C CN G+ C DPRF+GG
Sbjct: 59 CNQKILTCPKECPERKPKMNKKKKACFIDCSSKCEVTCKWRKANCNGYGSLCYDPRFVGG 118
Query: 128 DGNAFYFHGRRDADFCVVSDRDLHINAHFIGKRGADGMSRDFTWIQAIAVLFDDGGAHRL 187
DG FYFHG +D +F +VSD +L INAHFIG R A G +RDFTW+QA +V+FD +H L
Sbjct: 119 DGVMFYFHGNKDGNFAIVSDENLQINAHFIGTRPA-GRTRDFTWVQAFSVMFD---SHNL 174
Query: 188 YVGARKTAAWDD 199
+ A+K A+WDD
Sbjct: 175 VIAAKKVASWDD 186
>AT5G54370.1 | chr5:22075334-22076567 FORWARD LENGTH=338
Length = 337
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 82/136 (60%), Gaps = 21/136 (15%)
Query: 82 YPYCSAKMMECPDTCPTS---------CFVDCD--ACKPVC-----VCNVPG-ACGDPRF 124
Y C K + CP+ CP+ C+ DCD CK C CN PG AC DPRF
Sbjct: 33 YTRCYRKYIRCPEECPSKTAMNSKNKVCYADCDRPTCKSQCRMRKPNCNRPGSACYDPRF 92
Query: 125 IGGDGNAFYFHGRRDADFCVVSDRDLHINAHFIGKRGADGMSRDFTWIQAIAVLFDDGGA 184
IGGDG FYFHG+ + +F +VSD DL IN FIG R A G +RDFTWIQA+ LF+ +
Sbjct: 93 IGGDGIVFYFHGKSNEEFSLVSDSDLQINGRFIGHRPA-GRARDFTWIQALGFLFN---S 148
Query: 185 HRLYVGARKTAAWDDD 200
++ + A KTA+WD++
Sbjct: 149 NKFSLEAAKTASWDNE 164
>AT5G60530.1 | chr5:24334197-24335685 REVERSE LENGTH=440
Length = 439
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 77/132 (58%), Gaps = 21/132 (15%)
Query: 85 CSAKMMECPDTCPT----------SCFVDC-DACKPVCV-----CNVPGA-CGDPRFIGG 127
C K + CP CP CF+DC + C+ C CN G+ C DPRF+GG
Sbjct: 159 CYYKTLVCPGECPKRKPTKNKNTKGCFIDCTNKCEATCKWRKTNCNGYGSLCYDPRFVGG 218
Query: 128 DGNAFYFHGRRDADFCVVSDRDLHINAHFIGKRGADGMSRDFTWIQAIAVLFDDGGAHRL 187
DG FYFHG + +F +VSD +L INAHFIG R G +RDFTW+QA+ V+F++ H+L
Sbjct: 219 DGVMFYFHGSKGGNFAIVSDNNLQINAHFIGTRPV-GRTRDFTWVQALNVMFEN---HKL 274
Query: 188 YVGARKTAAWDD 199
+ A + WD+
Sbjct: 275 VITANRVNQWDE 286
>AT4G27400.1 | chr4:13705341-13706637 FORWARD LENGTH=342
Length = 341
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 80/151 (52%), Gaps = 23/151 (15%)
Query: 83 PYCSAKMMECPDTCPTS---------CFVDC--DACKPVCVCNVPG------ACGDPRFI 125
P C + ++CP+ CPT C+VDC C+ VC P C DPRFI
Sbjct: 37 PRCQLRYIDCPEECPTEMFPNSQNKICWVDCFKPLCEAVCRAVKPNCESYGSICLDPRFI 96
Query: 126 GGDGNAFYFHGRRDADFCVVSDRDLHINAHFIGKRGADGMSRDFTWIQAIAVLFDDGGAH 185
GGDG FYFHG+ + F +VSD D INA F G R A G +RDFTWIQA+ LF+ +H
Sbjct: 97 GGDGIVFYFHGKSNEHFSIVSDPDFQINARFTGHRPA-GRTRDFTWIQALGFLFN---SH 152
Query: 186 RLYVGARKTAAWDD--DERRYEQRGKGYISP 214
+ + K A WD D ++ G+ I P
Sbjct: 153 KFSLETTKVATWDSNLDHLKFTIDGQDLIIP 183
>AT1G54890.1 | chr1:20463107-20464407 FORWARD LENGTH=348
Length = 347
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 75/144 (52%), Gaps = 21/144 (14%)
Query: 85 CSAKMMECPDTCPT---------SCFVDC--DACKPVC-----VCNVPG-ACGDPRFIGG 127
C K CP CP+ +C +DC CK C CN G AC DPRFIGG
Sbjct: 42 CFLKKQTCPKQCPSFSPPNGSTKACVIDCFNPICKATCRNRKPNCNGKGSACLDPRFIGG 101
Query: 128 DGNAFYFHGRRDADFCVVSDRDLHINAHFIGKRGADGMSRDFTWIQAIAVLFDDGGAHRL 187
DG FYFHG+RD F ++SD D +NA FIG R +G +RDFTWIQ++ ++F +
Sbjct: 102 DGIVFYFHGKRDEHFALISDVDFQVNARFIGLR-PNGRARDFTWIQSLGLIFGP-NSKTF 159
Query: 188 YVGARKTAAWDD--DERRYEQRGK 209
+ A K WD D R GK
Sbjct: 160 SLEATKAEKWDHQVDHLRLSYEGK 183
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.141 0.465
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,461,398
Number of extensions: 195294
Number of successful extensions: 412
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 6
Length of query: 401
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 300
Effective length of database: 8,337,553
Effective search space: 2501265900
Effective search space used: 2501265900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 113 (48.1 bits)